Tutorial for quantification of collective signalling in time-lapse microscopy images
Published: 12 June 2024| Version 2 | DOI: 10.17632/z29fyn6kzz.2
Contributor:
Maciej DobrzynskiDescription
Raw data and a Jupyter notebook with Python code to quantify apoptosis-induced collective ERK activity waves in a starved MCF10A WT epithelium.
Files
Steps to reproduce
Download all folders, open the Jupyter notebook file "scripts/arcos-tutorial.ipynb", run the notebook.
Institutions
Universitat Bern
Categories
Cell Biology, Clustering, Mitogen-Activated Protein Kinase, Fluorescence Microscopy, Spatial Analysis, Time Series, Computational Biology
Funding
Swiss National Science Foundation
31003A-163061
Chan Zuckerberg Initiative (United States)
2022-252527
Swiss National Science Foundation
51PHPO-163583
Swiss National Science Foundation
IZKSZ3_62195
International Human Frontier Science Program Organization
RGP0043/2019
Swiss National Science Foundation
Div3 310030_185376
Swiss Cancer League
KLS-4867-08-2019