1769 results for chip-seq drosophila
Contributors: Kevin P. White, Matthew Slattery
Date: 2010-08-11
Drosophila simulans) GPL9395: Illumina Genome Analyzer (Drosophila pseudoobscura...Drosophila yakuba) Organism: Drosophila melanogaster Published on 2010...ChIP-Seq data...Drosophila Tiling 2.0R Array GPL9058: Illumina Genome Analyzer (Drosophila ... Accession Number: GSE23537 Platform: GPL6629: [DM_tiling2_MR] Affymetrix Drosophila Tiling 2.0R Array GPL9058: Illumina Genome Analyzer (Drosophila melanogaster) GPL9394: Illumina Genome Analyzer (Drosophila simulans) GPL9395: Illumina Genome Analyzer (Drosophila pseudoobscura) GPL11000: Illumina Genome Analyzer (Drosophila yakuba) Organism: Drosophila melanogaster Published on 2010-08-11 Summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf This SuperSeries is composed of the SubSeries listed below. Overall Design: Refer to individual Series Contact: Name: Kevin P. White Organization: University of Chicago Deparment: Institute for Genomics and Systems Biology Address: 900 E. 57th STR. 10th FL. Chicago IL 60615 USA Email: kpwhite@uchicago.edu Organization: Affymetrix, Inc. Address: Santa Clara CA 95051 USA Email: geo@ncbi.nlm.nih.gov, support@affymetrix.com Phone: 888-362-2447 Web-Link: http://www.affymetrix.com/index.affx
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Contributors: Cuartero S, Fres�n U, Reina O, Planet E, Espin�s ML
Date: 2014-04-18
Drosophila melanogaster third instar larvae were sequenced....ChIP-Seq peak calling of CP190 in wild-type and Ibf2 mutant Drosophila...ChIP-seq] ... ChIP-Seq peak calling of CP190 in wild-type and Ibf2 mutant Drosophila melanogaster third instar larvae Two wild-type and two Ibf2 mutant Drosophila melanogaster third instar larvae were sequenced.
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Contributors: Friederike Dündar, Thomas Conrad, Sarantis Chlamydas, Sunil J Raja, Fidel Ramirez, Filipe T Cadete, Asifa Akhtar
Date: 2016-04-25
Drosophila melanogaster) GPL13313: Illumina HiSeq 2000 (Drosophila virilis...Drosophila melanogaster) GPL9061: Illumina Genome Analyzer II (Drosophila...ChIP-seq of MSL1 in male and female fly samples...Drosophila melanogaster and Drosophila virilis Overall Design: ChIP-seq...Drosophila melanogaster Published on 2016-04-25 Summary: We report the ... Accession Number: GSE61340 Platform: GPL9058: Illumina Genome Analyzer (Drosophila melanogaster) GPL9061: Illumina Genome Analyzer II (Drosophila melanogaster) GPL13304: Illumina HiSeq 2000 (Drosophila melanogaster) GPL13313: Illumina HiSeq 2000 (Drosophila virilis) Organism: Drosophila melanogaster Published on 2016-04-25 Summary: We report the binding of MSL1 protein in male, female and mof2 mutant samples of Drosophila melanogaster and Drosophila virilis Overall Design: ChIP-seq of MSL1 in male and female fly samples Contact: Name: Friederike Dündar Organization: Weill Cornell Medicine Laboratory: Applied Bioinformatics Core Deparment: Physiology & Biophysics Address: 1300 York Ave New York New York 10065 USA Email: frd2007@med.cornell.edu Organization: GEO Address: USA
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Contributors: Kramer JM, Kochinke K, Oortveld MA, Marks H, Kramer D, de Jong EK, Asztalos Z, Westwood JT, Stunnenberg HG, Sokolowski MB
Date: 2011-01-05
Drosophila larvae, as well as in Drosophila larvae for which the euchromatic...ChIP-Seq sequencing of H3K9me2 in third instar Drosophila larvae...ChIP-Seq profiling of H3K9me2 in wt and EHMT KO third instar Drosophila ... This study describes the epigenetic profiling of the H3K9me2 in wt Drosophila larvae, as well as in Drosophila larvae for which the euchromatic catalytic enzyme depositing H3K9me2 (EHMT) is knocked out. ChIP-Seq profiling of H3K9me2 in wt and EHMT KO third instar Drosophila larvae
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Contributors: Ni X, Zhang YE, N�gre N, Chen S, Long M, White KP
Date: 2012-11-08
Drosophila species: Drosophila melanogaster, Drosophila simulans and Drosophila...ChIP-seq data of CTCF and RNA-seq data in Drosophila white prepupa on ...Drosophila species : Drosophila melanogaster, Drosophila simulans, Drosophila...Drosophila species: First, triplicate ChIP-seq data of CTCF (CCCTC binding...Drosophila pseudoobscura at white pre pupa stage; Second, triplicate RNA-seq...Drosophila species and their correlation with gene expression levels in ... This is a dataset which comprises the following two different kinds of genomic data in Drosophila species: First, triplicate ChIP-seq data of CTCF (CCCTC binding factor) binding profiles in each of the four closely related Drosophila species : Drosophila melanogaster, Drosophila simulans, Drosophila yakuba and Drosophila pseudoobscura at white pre pupa stage; Second, triplicate RNA-seq data of white pre pupa whole animals of three Drosophila species: Drosophila melanogaster, Drosophila simulans and Drosophila yakub. The binding site/region/peaks are called using a modified method of QuEST( please see details in our related publication). The sequence read counts and RPKM values are calculated following the method in Mortazavi et al 2008 Nature Methods paper. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Examination of CTCF binding in 4 Drosophila species and their correlation with gene expression levels in the same development stages
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Contributors: unknown
Date: 2015-05-01
Drosophila melanogaster S2 cells...ChIP-Seq]...ChIP-Seq peak calling of WOC, ROW, Z4, HP1c and Dsk2 against Input sample...Drosophila ubiquitin receptor dDsk2 associates to chromatin and stabilizes ... The Drosophila ubiquitin receptor dDsk2 associates to chromatin and stabilizes binding of the euchromatic dHP1c/WOC/ROW-complex (dHP1EU) to the transcription-start site (TSS) of active genes ChIP-Seq peak calling of WOC, ROW, Z4, HP1c and Dsk2 against Input sample in Drosophila melanogaster S2 cells
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Contributors: Tamás Schauer, Petra C. Schwalie, Ava Handley, Carla E. Margulies, Paul Flicek, and Andreas G. Ladurner
Date: 2013-08-25
ChIP-seq...ChIP-seq study analysing adult Drosophila melanogaster head, glial, neuronal...ChIP-seq for RNA pol II and H2A.v in Drosophila melanogaster ... ChIP-seq study analysing adult Drosophila melanogaster head, glial, neuronal and fat body, as well as embryonic RNA pol II and H2A.v binding by employing the GAL4-UAS system to generate GFP-fusion proteins and ChIP-seq
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Contributors: Jakub Orzechowski Westholm, Jakub Westholm, Qi Dai, Eric Lai
Date: 2013-04-04
ChIP-seq for Drosophila Insensitive, together with IgG control. Chromatin...Drosophila melanogaster) Organism: Drosophila melanogaster Published ... Accession Number: GSE44176 Platform: GPL9061: Illumina Genome Analyzer II (Drosophila melanogaster) Organism: Drosophila melanogaster Published on 2013-04-04 Summary: ChIP-seq for Drosophila Insensitive, together with IgG control. Chromatin extracted from 2.5-6h w[1118] embryos and 6.5-12h w[1118] embryos. Overall Design: Samples from two time points were analyzed: 2.5-6h embryos and 6.5-12h embryos. In each time point there is one Insv ChIP sample and one IgG control sample. Contact: Name: Jakub Orzechowski Westholm Organization: Memorial Sloan-Kettering Cancer Center Laboratory: Eric Lai Deparment: Developmental Biology Address: 1275 York Avenue, Box 252 New York NY 10065 USA Email: orzechoj@mskcc.org Organization: GEO Address: USA
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Contributors: M Lluisa Espinas, Maria L Espinàs, Sergi Cuartero
Date: 2014-04-18
ChIP-Seq peak calling of CP190 in wild-type and Ibf2 mutant Drosophila...Drosophila melanogaster) Organism: Drosophila melanogaster Published...ChIP-seq]...Drosophila melanogaster third instar larvae were sequenced. Contact: ... Accession Number: GSE52240 Platform: GPL13304: Illumina HiSeq 2000 (Drosophila melanogaster) Organism: Drosophila melanogaster Published on 2014-04-18 Summary: ChIP-Seq peak calling of CP190 in wild-type and Ibf2 mutant Drosophila melanogaster third instar larvae Overall Design: Two wild-type and two Ibf2 mutant Drosophila melanogaster third instar larvae were sequenced. Contact: Name: M Lluisa Espinas Organization: IBMB-CSIC Address: Baldiri Reixac 10 Barcelona 08028 Spain Email: mlebmc@ibmb.csic.es Organization: GEO Address: USA
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Contributors: Kevin P. White, Kevin P White, Nicolas N Negre, Parantu K Shah
Date: 2009-03-20
Drosophila melanogaster Whole Genome ChIP-on-Chip Set 244K, Microarray...ChIP-seq: For each combination of time-point and antibody, triplicate ...Drosophila melanogaster) Organism: Drosophila melanogaster Published...Drosophila at different time points of development: ChIP-chip, ChIP-seq ... Accession Number: GSE15292 Platform: GPL6949: Agilent-019182 Drosophila melanogaster Whole Genome ChIP-on-Chip Set 244K, Microarray 1 of 3 GPL6950: Agilent-019183 Drosophila melanogaster Whole Genome ChIP-on-Chip Set 244K, Microarray 2 of 3 GPL6951: Agilent-019184 Drosophila melanogaster Whole Genome ChIP-on-Chip Set 244K, Microarray 3 of 3 GPL9058: Illumina Genome Analyzer (Drosophila melanogaster) Organism: Drosophila melanogaster Published on 2009-03-20 Summary: This is a dataset generated by the Drosophila Regulatory Elements modENCODE Project led by Kevin P. White at the University of Chicago. It contains ChIP-chip data on Agilent 244K dual-color arrays for 6 Histone modifications (H3K9me3, H3K27me3, H3K4me3, H3K4me1, H3K27Ac, H3K9Ac), PolII and CBP/p300. Each factor has been studied for 12 different time-points of Drosophila development. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf This SuperSeries is composed of the SubSeries listed below. Overall Design: ChIP-chip: For each combination of time-point and antibody, triplicate ChIP experiments have been performed and hybridized on Agilent 244K arrays. 3 arrays per genome have been used so that each time-point is a set of 9 tiling arrays. ChIP-seq: For each combination of time-point and antibody, triplicate ChIP experiments have been performed and hybridized on Agilent 244K arrays. The hybridizations have been verified by sequencing one replicate of IP and one replicate of Input following Solexa sequencing procedure. RNA-seq: For each time-point (E-0-4h, E-4-8h, E-8-12h, E-12-16h, E-16-20h, E20-24h, L1, L2, L3, Pupae, Adult Males and Adult Females) a total RNA extraction has been performed. After conversion into double stranded DNA, the samples have been sequenced in duplicate on Solexa Genome Analyzer following Solexa sequencing procedure. Contact: Name: Kevin P. White Organization: University of Chicago Deparment: Institute for Genomics and Systems Biology Address: 900 E. 57th STR. 10th FL. Chicago IL 60615 USA Email: kpwhite@uchicago.edu Organization: GEO Address: USA
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