1765 results for chip-seq drosophila
Contributors: Helen McNeill, Kelvin Yeung
Date: 2017-03-16
ChIP-seq against endogenous Atro. These data sets will serve as a valuable...ChIP-seq and was used as a control. Contact: Name: Helen McNeill Organization...Drosophila melanogaster) Organism: Drosophila melanogaster Published...ChIP-seq experiments in untreated S2 cells. A corresponding non-specific...Drosophila Atro mutants have a large range of phenotypes, including neurodegeneration...ChIP-seq of Atrophin in Drosophila S2 cells ... Accession Number: GSE87509 Platform: GPL16479: Illumina MiSeq (Drosophila melanogaster) Organism: Drosophila melanogaster Published on 2017-03-16 Summary: Drosophila Atro mutants have a large range of phenotypes, including neurodegeneration, segmentation, patterning and planar polarity defects. Although Atro mutants have diverse phenotypes, little is known about Atro’s binding partners and downstream targets. We present the first genomic analysis of Atro using ChIP-seq against endogenous Atro. These data sets will serve as a valuable resource for future studies on Atro. Overall Design: We performed three independent biological replicates of Atro ChIP-seq experiments in untreated S2 cells. A corresponding non-specific IgG control ChIP was performed with each Atro ChIP-seq and was used as a control. Contact: Name: Helen McNeill Organization: Lunenfeld Tanenbaum Research Institute Address: 600 University Ave. Toronto Ontario Canada Email: mcneill@lunenfeld.ca Organization: GEO Address: USA
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Contributors: Friederike Dündar, Thomas Conrad, Sarantis Chlamydas, Sunil J Raja, Fidel Ramirez, Filipe T Cadete, Asifa Akhtar
Date: 2016-04-25
Drosophila melanogaster) GPL13313: Illumina HiSeq 2000 (Drosophila virilis...Drosophila melanogaster) GPL9061: Illumina Genome Analyzer II (Drosophila...ChIP-seq of MSL1 in male and female fly samples...Drosophila melanogaster and Drosophila virilis Overall Design: ChIP-seq...Drosophila melanogaster Published on 2016-04-25 Summary: We report the ... Accession Number: GSE61340 Platform: GPL9058: Illumina Genome Analyzer (Drosophila melanogaster) GPL9061: Illumina Genome Analyzer II (Drosophila melanogaster) GPL13304: Illumina HiSeq 2000 (Drosophila melanogaster) GPL13313: Illumina HiSeq 2000 (Drosophila virilis) Organism: Drosophila melanogaster Published on 2016-04-25 Summary: We report the binding of MSL1 protein in male, female and mof2 mutant samples of Drosophila melanogaster and Drosophila virilis Overall Design: ChIP-seq of MSL1 in male and female fly samples Contact: Name: Friederike Dündar Organization: Weill Cornell Medicine Laboratory: Applied Bioinformatics Core Deparment: Physiology & Biophysics Address: 1300 York Ave New York New York 10065 USA Email: frd2007@med.cornell.edu Organization: GEO Address: USA
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Contributors: Kevin P. White, Matthew Slattery
Date: 2010-08-11
Drosophila simulans) GPL9395: Illumina Genome Analyzer (Drosophila pseudoobscura...Drosophila yakuba) Organism: Drosophila melanogaster Published on 2010...ChIP-Seq data...Drosophila Tiling 2.0R Array GPL9058: Illumina Genome Analyzer (Drosophila ... Accession Number: GSE23537 Platform: GPL6629: [DM_tiling2_MR] Affymetrix Drosophila Tiling 2.0R Array GPL9058: Illumina Genome Analyzer (Drosophila melanogaster) GPL9394: Illumina Genome Analyzer (Drosophila simulans) GPL9395: Illumina Genome Analyzer (Drosophila pseudoobscura) GPL11000: Illumina Genome Analyzer (Drosophila yakuba) Organism: Drosophila melanogaster Published on 2010-08-11 Summary: For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf This SuperSeries is composed of the SubSeries listed below. Overall Design: Refer to individual Series Contact: Name: Kevin P. White Organization: University of Chicago Deparment: Institute for Genomics and Systems Biology Address: 900 E. 57th STR. 10th FL. Chicago IL 60615 USA Email: kpwhite@uchicago.edu Organization: Affymetrix, Inc. Address: Santa Clara CA 95051 USA Email: geo@ncbi.nlm.nih.gov, support@affymetrix.com Phone: 888-362-2447 Web-Link: http://www.affymetrix.com/index.affx
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Contributors: Ni X, Zhang YE, N�gre N, Chen S, Long M, White KP
Date: 2012-11-08
Drosophila species: Drosophila melanogaster, Drosophila simulans and Drosophila...ChIP-seq data of CTCF and RNA-seq data in Drosophila white prepupa on ...Drosophila species : Drosophila melanogaster, Drosophila simulans, Drosophila...Drosophila species: First, triplicate ChIP-seq data of CTCF (CCCTC binding...Drosophila pseudoobscura at white pre pupa stage; Second, triplicate RNA-seq...Drosophila species and their correlation with gene expression levels in ... This is a dataset which comprises the following two different kinds of genomic data in Drosophila species: First, triplicate ChIP-seq data of CTCF (CCCTC binding factor) binding profiles in each of the four closely related Drosophila species : Drosophila melanogaster, Drosophila simulans, Drosophila yakuba and Drosophila pseudoobscura at white pre pupa stage; Second, triplicate RNA-seq data of white pre pupa whole animals of three Drosophila species: Drosophila melanogaster, Drosophila simulans and Drosophila yakub. The binding site/region/peaks are called using a modified method of QuEST( please see details in our related publication). The sequence read counts and RPKM values are calculated following the method in Mortazavi et al 2008 Nature Methods paper. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Examination of CTCF binding in 4 Drosophila species and their correlation with gene expression levels in the same development stages
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Contributors: Kramer JM, Kochinke K, Oortveld MA, Marks H, Kramer D, de Jong EK, Asztalos Z, Westwood JT, Stunnenberg HG, Sokolowski MB
Date: 2011-01-05
Drosophila larvae, as well as in Drosophila larvae for which the euchromatic...ChIP-Seq sequencing of H3K9me2 in third instar Drosophila larvae...ChIP-Seq profiling of H3K9me2 in wt and EHMT KO third instar Drosophila ... This study describes the epigenetic profiling of the H3K9me2 in wt Drosophila larvae, as well as in Drosophila larvae for which the euchromatic catalytic enzyme depositing H3K9me2 (EHMT) is knocked out. ChIP-Seq profiling of H3K9me2 in wt and EHMT KO third instar Drosophila larvae
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Contributors: Tamás Schauer, Petra C. Schwalie, Ava Handley, Carla E. Margulies, Paul Flicek, and Andreas G. Ladurner
Date: 2013-08-25
ChIP-seq...ChIP-seq study analysing adult Drosophila melanogaster head, glial, neuronal...ChIP-seq for RNA pol II and H2A.v in Drosophila melanogaster ... ChIP-seq study analysing adult Drosophila melanogaster head, glial, neuronal and fat body, as well as embryonic RNA pol II and H2A.v binding by employing the GAL4-UAS system to generate GFP-fusion proteins and ChIP-seq
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ChiP-seq profiling of Drosophila melanogaster salivary glands to identify targets for NSL1 and MCRS2
Contributors: Raja SJ, Charapitsa I, Conrad T, Vaquerizas JM, Gebhardt P, Holz H, Kadlec J, Fraterman S, Luscombe NM, Akhtar A.
Date: 2010-06-25
ChiP-seq profiling of Drosophila melanogaster salivary glands to identify ... ChiP-seq profiling of Drosophila melanogaster salivary glands to identify targets for NSL1 and MCRS2.
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Contributors: Jakub Orzechowski Westholm, Jakub Westholm, Qi Dai, Eric Lai
Date: 2013-04-04
ChIP-seq for Drosophila Insensitive, together with IgG control. Chromatin...Drosophila melanogaster) Organism: Drosophila melanogaster Published ... Accession Number: GSE44176 Platform: GPL9061: Illumina Genome Analyzer II (Drosophila melanogaster) Organism: Drosophila melanogaster Published on 2013-04-04 Summary: ChIP-seq for Drosophila Insensitive, together with IgG control. Chromatin extracted from 2.5-6h w[1118] embryos and 6.5-12h w[1118] embryos. Overall Design: Samples from two time points were analyzed: 2.5-6h embryos and 6.5-12h embryos. In each time point there is one Insv ChIP sample and one IgG control sample. Contact: Name: Jakub Orzechowski Westholm Organization: Memorial Sloan-Kettering Cancer Center Laboratory: Eric Lai Deparment: Developmental Biology Address: 1275 York Avenue, Box 252 New York NY 10065 USA Email: orzechoj@mskcc.org Organization: GEO Address: USA
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Contributors: unknown
Date: 2013-07-15
Drosophila dosage compensation...ChIP-seq experiments compared the binding profiles of CLAMP in male and...ChIP-seq and mRNA-seq experiments were performed to understand the role ... ChIP-seq and mRNA-seq experiments were performed to understand the role of the CLAMP protein in dosage compensation ChIP-seq experiments compared the binding profiles of CLAMP in male and female cells and mRNA-seq data to define the role of CLAMP in regulating genes on the X-chromosome
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Contributors: unknown
Date: 2015-05-01
Drosophila melanogaster S2 cells...ChIP-Seq]...ChIP-Seq peak calling of WOC, ROW, Z4, HP1c and Dsk2 against Input sample...Drosophila ubiquitin receptor dDsk2 associates to chromatin and stabilizes ... The Drosophila ubiquitin receptor dDsk2 associates to chromatin and stabilizes binding of the euchromatic dHP1c/WOC/ROW-complex (dHP1EU) to the transcription-start site (TSS) of active genes ChIP-Seq peak calling of WOC, ROW, Z4, HP1c and Dsk2 against Input sample in Drosophila melanogaster S2 cells
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