Data for: Assessing the potential of RAD-sequencing to resolve phylogenetic relationships within species radiations: the fly genus Chiastocheta (Diptera: Anthomyiidae) as a case study

Published: 28 June 2017| Version 2 | DOI: 10.17632/4dd3kxdspt.2
Contributors:
Tomasz Suchan,
Michał Ronikier,
Nadir Alvarez,
Christophe Dessimoz,
Nils Arrigo,
Brent C. Emerson,
Kevin Gori,
Sereina Rutschmann,
Anahí Espíndola

Description

Data files used for the phylogenetic and phylogenomic analysis of the genus Chiastocheta (Diptera: Anthomyiidae) for the paper: Suchan T, Espíndola A, Rutschmann S, Emerson BC, Gori K, Dessimoz C, Arrigo N, Ronikier M, Alvarez N (2017) Data from: Assessing the potential of RAD-sequencing to resolve phylogenetic relationships within species radiations: the fly genus Chiastocheta (Diptera: Anthomyiidae) as a case study. Molecular Phylogenetics and Evolution Details on the methods can be found in the main paper. Description of the data files: Chiastocheta_c75d6m20p10-blk-bad.alleles - pyRAD alleles file of the RAD-seq data Chiastocheta_c75d6m20p10-blk-bad.phy - Phylip file of the concatenated RAD-seq data Chiastocheta_COI_COII_dloop.phy - Phylip file of the concatenated mtDNA regions: COI, COII, D-loop (with gaps occuring in more than 50% of individuals removed) Chiastocheta_COI_COII_dloop.partitions - partitions file for the Phylip file of the concatenated mtDNA regions: COI, COII, and D-loop (with gaps occuring in more than 50% of individuals removed) Chiastocheta_COI_COII.phy - Phylip file of the concatenated mtDNA regions: COI and COII Chiastocheta_COI_COII.partitions - partitions file for the Phylip file of the concatenated mtDNA regions: COI and COII

Files