Data for figures

Published: 31 October 2025| Version 1 | DOI: 10.17632/6rvykfgxwv.1
Contributor:
Jiang Hongchen

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Original data for Figure 1-6 & 8-9

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Microbial Cultivation and Batch Experiment Protocol​ The Fe(III)-rich nontronite NAu-2 (source: Clay Minerals Society) was Na-saturated, sonicated, and fractionated to 0.02-0.5 µm particles. Shewanella oneidensisMR-1 was cultured in Luria-Bertani medium, while Desulfovibrio vulgariswas grown in a specialized anoxic medium containing CaSO₄, NH₄Cl, KH₂PO₄, MgSO₄·7H₂O, yeast extract, sodium lactate, and resazurin. For bioreduction experiments, batch incubations were set up under strictly anoxic conditions (95% N₂, 5% H₂ glove box) using 5 mg/mL NAu-2 as the sole electron acceptor and 20 mM lactate as the electron donor. Experimental variables included the initial MR-1:SRB cell ratio (1:0, 0:1, 0.5:0.5, 1:1), Na₂SO₄ concentration (0, 5, 10 mM), and the presence/absence of the electron shuttle anthraquinone-2,6-disulfonate (AQDS). All treatments, including abiotic controls and a chemical reduction control with 5 mM sodium sulfide, were incubated at 25°C for 30 days, with triplicate sampling at 15 time points. ​Chemical Analysis Methods for Figures 1-6​ The production of Fe(II) (Figures 1-4) was quantified using the 1,10-phenanthroline assay. Sulfate consumption (Figure 5) was determined by BaCl₂ titration, and sulfide production (Figure 6) was measured spectrophotometrically according to the method of Cline (1969). The initial iron reduction rate was calculated mathematically from the Fe(II) production data. ​Spectroscopic Analysis and Instrumentation for Figures 8-9​ Fourier-transform infrared (FTIR) spectra (Figures 8-9) were acquired using a Midac M2000 FTIR spectrometer. Self-supporting sample films were prepared by mixing ~2 mg of dried clay pellets with 200 mg of KBr and pressing into discs under anoxic conditions. Spectra were recorded from 4000-400 cm⁻¹ at a resolution of 4 cm⁻¹ (50 scans). The raw absorbance data for the regions 900-700 cm⁻¹ (M-O-H deformation; Figure 8) and 3800-3200 cm⁻¹ (O-H stretching; Figure 9) were mathematically processed into their second derivatives using the GRAMS/32 software for detailed analysis of structural changes. ​Key Reagents and Software​ Key reagents included nontronite NAu-2, sodium lactate, Na₂SO₄, AQDS, and sodium sulfide. Data processing and mineral phase identification for the associated XRD analyses (not in the specified figures but part of the overall methodology) utilized the JADE 7 software package.

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