Data for manuscript: Molecular defense responses to natural enemies determine seedling survival in a subtropical forest

Published: 6 May 2022| Version 1 | DOI: 10.17632/7schphsc6w.1
Baocai Han,
Franca Bongers,
Xiangcheng Mi,
Lei Chen,
Keping Ma


The package contains eight data files (in csv format) that were used in the analyses of the above mentioned manuscript. The structures of the data files are listed below with detailed descriptions of their contents. 1. 01_copy_number_defense_resonse_to_fungus.csv: 'data.frame': 99 obs. of 131 variables 02_copy_number_defense_resonse_to_bacterium.csv: 'data.frame': 99 obs. of 218 variables 03_copy_number_defense_resonse_to_insect.csv: 'data.frame': 99 obs. of 8 variables 04_copy_number_defense_resonse_to_virus.csv: 'data.frame': 99 obs. of 47 variables description of variables four the data frame: SPCODE: species code included in the study. species: latin name of species. the column for 3 to the last one refers to the homologous gene cluster ID. 2. 05_seeding_neighborhood_variables_defense_resonse_to_fungus.csv: 'data.frame': 20224 obs. of 14 variables 06_seeding_neighborhood_variables_defense_resonse_to_bacterium.csv: 'data.frame': 20224 obs. of 14 variables 07_seeding_neighborhood_variables_defense_resonse_to_insect.csv: 'data.frame': 20224 obs. of 14 variables 08_seeding_neighborhood_variables_defense_resonse_to_virus.csv: 'data.frame': 20224 obs. of 14 variables YEAR: the year recorded the focal seedling. TRAP: the trap where the focal seedling located in. PLOT:the plot where the focal seedling located in. PLOTID: the plot ID named after the trap. TAG: the tag labeled the focal seedling IDSEEDL: the ID of the focal seedling named after the trap, the plot and the tag. fSPCODE: species code of the focal seedling. species: latin name of the focal seedling. HT: height of the focal seedling. SUR1y: alive(1) or dead (0) of the focal seedling after one year. seedl.constd:the standardizednumber of con-specific seedlings. BA.constd: the standardized basal area of conspecific adults. sNTFDstd:the standardized nearest taxon functional distance for neighbor seedlings. aNTFDstd:the standardized nearest taxon functional distance for neighbor adults.



Institute of Botany Chinese Academy of Sciences


Community Ecology