MeLB Raw DNA Methylation Data; Herrgott et al., 2022

Published: 21 June 2022| Version 1 | DOI: 10.17632/f2dk8pf68g.1
Contributors:
Grayson Herrgott,

Description

Raw cfDNA methylation data associated with 208 liquid biopsy serum collections from meningioma (MNG; n=63) and non-MNG (Other CNS diseases, glioma, pituitary tumors; n = 145).

Files

Steps to reproduce

library(minfi) idat <- read.metharray.exp(targets = NULL,base=getwd(),recursive = TRUE) proc <- preprocessNoob(idat, offset = 0, dyeCorr = TRUE, verbose = TRUE, dyeMethod="reference") detP <- detectionP(idat, type = "m+u") proc.r <- ratioConvert(proc) is.na(assays(proc.r)$Beta) <- (detP[rownames(proc.r), colnames(proc.r)] > 1E-16) beta <- assays(proc.r)$Beta

Institutions

Henry Ford Health System

Categories

Meningioma, DNA Methylation

License