Title: Transcriptomics-based screening of molecular signatures associated with patients overall survival and their key regulators in subtypes of breast cancer Supplementary_File_5:Venn_diagram_for_candidate_prognostic_markers Subtype(s) Total GeneName BL_Her2_LuA_LuB 5 MEOX1 FIGF PPAP2B RNF186 CSN2 BL_Her2_LuA 1 C1QTNF9 BL_Her2_LuB 1 TDG BL_LuA_LuB 12 GDF10 CX3CL1 TSPAN7 COX17 ITM2A DMD SH3BGRL2 FREM1 CYYR1 TESC IL11RA ACSS2 Her2_LuA_LuB 15 RPL10A CSN3 CA4 LTBP4 IGFBP6 HOXA4 TSHZ2 MAP2K6 SAA4 GLT25D2 KIT FAM107A GPRC5A C4BPA CMTM7 BL_Her2 2 RACGAP1 COMTD1 BL_LuA 5 S100P SH3BP5 CRHBP MYOC JAM2 BL_LuB 14 CENPE STIL DNASE1L3 CXCL12 MTDH ADH1A TENC1 ABCB1 GPRASP1 DTL SULF1 COL10A1 VIPR1 ATP5E Her2_LuA 5 RYR3 HMGB3 CIB1 BOC BMX Her2_LuB 10 ARPC3 KLHL29 ARHGEF6 BEGAIN PYCR1 SMR3B HMBOX1 EFCAB1 BNC1 MMP11 LuA_LuB 98 TSPAN11 NDUFB1 TK1 COPB2 BUB3 TCF7L1 ITIH5 LGR6 ERG FABP7 ASPM KIAA0408 ATP1A2 MYOM1 CDO1 EPHA2 KLK7 TSPAN13 ITGB4 KRT13 HOXD10 DAB2IP FOXC1 SOD3 TRIM2 ATOH8 DBC1 PALMD SLC25A27 ARHGEF4 TF UBL5 KLK5 F10 RPL3 RAPGEF3 PENK RGL1 PIGR CXCL1 DYNC1I1 C9orf125 HOXA9 CPAMD8 STOX2 KRT15 ABCG5 CLIP4 H2AFV CA3 SV2B CAPN6 RRAD TSLP PAFAH1B3 NDRG2 TGFBR2 IL33 NCALD EGR2 TGFBR3 KCNMB1 BZW1 SOX10 EPHB6 RAP2C INPP1 HOXA5 PIK3C2G BCL11A TAC1 NFAT5 CKMT2 PTX3 ADRB2 PLP1 NMT2 HN1 ENPP2 RELN TMTC1 LARP6 LEPREL1 DYNLT3 PLEKHF2 HOXA7 SLC6A14 ICAM2 SFRP1 DARC WWP1 SRP9 NEK2 CENPF FBLN5 BIN1 FGFBP1 ECT2 BL 35 CD34 CYP26A1 DIAPH3 ADD3 MYLIP P4HA2 COX6C ANP32E MYOM2 MRPL13 PGBD5 TTC28 SDC1 ARMC9 MRPL14 BDH2 TPO CCNG2 RASL10A THRA DPM3 WWTR1 RPL41 ALB LRIG1 GSTM2 NCAPG TNFRSF12A ABHD14B HIST1H4K PTTG1 UBE2T NDUFB9 KIF23 ZDHHC17 Her2 30 CHPT1 ATOX1 ACTR3 RGN ATP2C2 ACTR3B IL17RD C1QTNF3 ALDOC ADHFE1 EMP2 HM13 TMEM35 HIST1H2BC GALT SLC41A3 CDK6 STARD3 DAGLA IL13RA1 C12orf24 ZBTB44 ZNF217 UBFD1 ITGB8 VEGFA TUBB3 MLPH ARHGEF10 ACADS LuA 150 TRIP6 EDN1 SDS EMCN TSTA3 CHRDL1 TBC1D4 SLC28A3 LALBA PDE2A MRAS DPYSL2 B3GNT3 SASH1 CD59 GIMAP8 SCARA5 CLDN5 RUNX3 NTRK2 PKD2 CNN1 SDPR EPN3 ID4 ADAMTS1 SPRY1 SH3YL1 SORBS1 DAP3 ATP6V0B MXI1 POLR1E PDGFA CRYAB AKAP12 TRIM29 IFI30 GABRP LDB2 ROBO4 SOX8 SPTBN1 CAV1 PID1 LHX6 RASIP1 SLC16A3 OXTR ETS2 PPARG GPR146 LHFP SPRY2 HOXD4 SMC4 MID1 SLC9A3R1 DST CNGA1 HOXA3 METTL7A AHNAK FBXW7 FHL1 CANT1 RBPMS PLAGL1 KLF4 CDKN1C AQP1 SCHIP1 TWIST2 NAB1 MPDZ PPL ABCA8 CARD6 AOC3 RBMS3 CSRP1 TMEM132C CLIP3 EDN3 CCL14 LPL HIST1H2BB TCF7L2 ETV5 CTNND1 RPL22 SOSTDC1 PIK3R1 GPC3 STXBP1 CAPG CLDN8 PPP1R1A C9orf40 MYH11 PER1 GPM6B NAV2 IRX1 SOX17 PAK3 CAV2 MAP7D3 RUNX1T1 TLE4 RUNDC3B MCAM WIF1 DENND2A DLK1 PODXL ALDH7A1 CD46 PER2 RBP7 HSPB7 C10orf10 HIST1H1C MAMDC2 SLC7A10 PELI1 PPT1 MALL RAB7B ARHGAP10 PPARGC1B UGT8 MAPK4 KCNN4 SPINT2 C2orf40 FOXO1 MATN4 CCND3 STAT1 SYNGR1 C1orf9 CCDC8 SEMA6A EEF1G TMEM100 TNRC6B EIF4B AQP7 KCTD14 LuB 138 C9orf116 E2F8 PTN VAMP8 MPPED2 ALDH1L1 SLC27A6 GPSM2 FNDC4 DEPDC1B RMI1 SLC25A37 RPE SHCBP1 HLTF C1orf27 PPP1R12B AGR3 LMNB1 PPARA ANAPC11 BIK HMGN1 TSC22D1 POLR3K FAHD1 TLN2 MFGE8 DEFB1 KCNH8 CFI ATF3 FAM117A SMYD3 ATP5I BLVRA NEK4 ADORA1 GYPC SIRPA ORMDL2 EDA CCDC82 FAHD2A RIBC2 SAP30 TCEB1 CEP55 PTHLH MRPS17 APOLD1 ANGPTL7 GJB2 RYR1 LAGE3 CCL28 PHLDA1 LIF CPEB1 ERO1L FOLR1 ARID5B PMAIP1 HIST1H2BJ C5orf30 RNPEP KIFC1 KRT18 ZWILCH KIF18A TGFA COLEC11 ANPEP EGR1 RPL13 COL17A1 MSRA IL22RA2 BMP6 LAMB3 PLSCR4 VIT NVL STAC2 CSN1S1 MORF4L2 ZCCHC11 SEMA3G C11orf48 SMARCA5 LRRC2 EGF TMEM14A RAD51 ZBTB16 KIF4A ARFGEF1 MYCBP AK5 ATP5H CCND2 SLC34A2 TNMD IL17B DLC1 CRISPLD1 AMPD1 RAD21 SAT2 MLXIPL ADH1C HIST1H2BD NRG2 ZMPSTE24 PSMB3 CENPA GALNT7 C16orf5 SNCA KIAA1598 NCOA7 GNL1 NDC80 NTRK3 RPS14 BACH2 MAP2K3 C12orf48 PZP RPS9 HSD17B6 CENPM SATB1 TP63 LPHN3 MTERFD1 LETMD1 HYAL1