Title: Transcriptomics-based screening of molecular signatures associated with patients overall survival and their key regulators in subtypes of breast cancer Supplementary_File_3:LuminalA_candidate_prognostic_markers GeneName GSE10886_logFC GSE26304_logFC GSE59246_logFC HR HR_Lower HR_Higher NEK2 1.111 0.738 2.02 1.97 1.65 2.35 ASPM 0.965 1.194 1.63 1.91 1.61 2.28 SMC4 0.605 0.589 0.855 1.69 1.43 2.01 TSPAN13 1.698 1.094 1.59 1.55 1.31 1.85 ECT2 0.677 0.641 0.932 1.54 1.29 1.82 HN1 0.675 1.202 1.41 1.54 1.2 1.98 COX17 0.864 0.692 0.921 1.53 1.28 1.81 C1orf9 0.594 0.858 0.782 1.44 1.21 1.71 S100P 2.001 1.831 3.93 1.44 1.21 1.71 UBL5 1.072 0.775 0.942 1.44 1.21 1.7 TSTA3 0.807 0.666 0.973 1.43 1.21 1.7 CANT1 0.589 0.705 1.28 1.4 1.18 1.66 CENPF 0.764 1.098 1.77 1.4 1.18 1.66 EPN3 0.945 1.439 1.43 1.4 1.18 1.66 COPB2 0.756 0.767 0.691 1.38 1.16 1.63 TK1 0.859 1.247 1.9 1.38 1.16 1.64 RAP2C 0.598 0.667 1.06 1.36 1.15 1.61 SDS 0.806 0.645 1.41 1.36 1.15 1.62 SLC9A3R1 0.698 0.801 1.25 1.35 1.14 1.6 SRP9 1.309 0.72 0.757 1.35 1.14 1.6 STAT1 1.487 0.915 1.16 1.35 1.14 1.6 WWP1 1.608 0.802 1.14 1.35 1.14 1.6 HMGB3 0.847 0.734 1.83 1.34 1.05 1.72 PAFAH1B3 1.192 1.008 1.28 1.34 1.13 1.59 SLC16A3 0.95 1.41 1.46 1.34 1.13 1.6 GPRC5A 1.098 2.901 2.34 1.32 1.11 1.57 DAP3 0.594 0.815 0.815 1.3 1.09 1.54 CAPG 0.769 0.681 0.965 1.28 1.08 1.52 CD46 0.865 0.751 0.959 1.28 1.08 1.52 IFI30 1.801 1.473 0.917 1.28 1.08 1.52 ATP6V0B 0.724 0.597 1.42 1.27 1.07 1.51 H2AFV 0.896 1.146 0.856 1.27 1.07 1.51 HIST1H1C 1.368 1.71 1.45 1.27 1.07 1.5 BZW1 0.608 0.918 0.981 1.25 1.06 1.48 BUB3 0.842 0.686 0.862 1.24 1.05 1.47 NDUFB1 0.898 0.882 0.833 1.23 1.04 1.46 PLEKHF2 1.515 0.725 1.3 1.23 1.04 1.46 CIB1 0.875 0.788 1.33 1.22 1.03 1.45 PPT1 0.888 0.984 1.11 1.21 1.02 1.44 DYNLT3 0.706 1.128 0.929 1.2 1.01 1.42 HIST1H2BB 0.915 0.941 0.878 1.2 1.01 1.42 SPINT2 0.619 0.589 1.34 1.19 1 1.41 BCL11A -1.305 -1.413 -3.46 0.84 0.71 1 CNGA1 -0.869 -0.93 -1.48 0.84 0.71 1 DMD -1.462 -2.427 -2.65 0.84 0.7 0.99 ERG -1.058 -0.784 -1.6 0.84 0.71 0.99 HOXA5 -2.229 -1.974 -2.84 0.84 0.71 1 PTX3 -1.493 -1.676 -2.63 0.84 0.71 0.99 SH3YL1 -0.592 -0.682 -1.73 0.84 0.71 0.99 CLDN8 -1.369 -4.481 -3.68 0.83 0.7 0.98 KLK5 -2.016 -2.878 -3.12 0.83 0.7 0.98 MAP2K6 -0.824 -1.445 -1.72 0.83 0.7 0.99 MATN4 -0.832 -0.836 -1.52 0.83 0.7 0.98 MCAM -0.987 -1.064 -2.15 0.83 0.7 0.99 PDGFA -2.064 -1.619 -1.26 0.83 0.7 0.99 TBC1D4 -0.605 -1.238 -1.15 0.83 0.7 0.98 TGFBR2 -1.527 -1.14 -2.29 0.83 0.7 0.98 ABCG5 -0.834 -0.587 -1.55 0.82 0.69 0.97 B3GNT3 -1.695 -1.682 -3.44 0.82 0.69 0.97 CSRP1 -2.221 -1.626 -1.37 0.82 0.7 0.98 CTNND1 -0.641 -0.729 -0.979 0.82 0.69 0.97 ETS2 -1.036 -0.793 -1.27 0.82 0.69 0.97 HOXA9 -0.595 -2.624 -2.85 0.82 0.69 0.97 KIAA0408 -0.874 -0.835 -2.66 0.82 0.69 0.98 LARP6 -0.953 -0.93 -2.06 0.82 0.69 0.97 LPL -1.581 -1.422 -5.13 0.82 0.69 0.98 MAPK4 -0.968 -0.954 -2.82 0.82 0.69 0.97 PLAGL1 -1.551 -1.65 -1.65 0.82 0.7 0.98 PODXL -1.414 -0.612 -0.941 0.82 0.69 0.97 WIF1 -2.978 -3.941 -3.82 0.82 0.69 0.97 ADAMTS1 -1.714 -1.127 -1.48 0.81 0.68 0.96 AQP7 -0.677 -0.798 -3.42 0.81 0.68 0.96 ARHGEF4 -1.163 -1.032 -1.95 0.81 0.68 0.96 BIN1 -0.855 -0.897 -1.8 0.81 0.69 0.96 CX3CL1 -3.778 -2.721 -2.84 0.81 0.68 0.96 DENND2A -1.546 -1.116 -2.54 0.81 0.68 0.96 FHL1 -1.747 -1.063 -2.14 0.81 0.65 0.92 KRT13 -2.944 -2.411 -2.88 0.81 0.68 0.96 NCALD -2.011 -2.184 -2.37 0.81 0.68 0.96 RUNX3 -1.035 -1.345 -1.09 0.81 0.68 0.96 TCF7L2 -1.312 -1.285 -2.31 0.81 0.69 0.96 ALDH7A1 -1.053 -1.48 -1.82 0.8 0.67 0.95 ETV5 -1.726 -1.469 -2.47 0.8 0.67 0.95 GABRP -2.526 -1.804 -3.94 0.8 0.68 0.95 NAB1 -0.733 -0.597 -0.885 0.8 0.68 0.95 OXTR -4.436 -3.501 -2.78 0.8 0.67 0.95 PIK3C2G -1.626 -2.662 -3.14 0.8 0.68 0.95 PKD2 -1.103 -0.73 -1.17 0.8 0.67 0.95 RNF186 -0.888 -2.041 -4.56 0.8 0.67 0.94 SCHIP1 -0.675 -0.976 -0.929 0.8 0.67 0.95 SH3BP5 -1.076 -0.642 -2.17 0.8 0.67 0.95 SOSTDC1 -1.326 -2.762 -4.24 0.8 0.68 0.95 BMX -0.624 -0.994 -2.36 0.79 0.67 0.94 CA3 -0.625 -2.849 -2.61 0.79 0.67 0.94 CAV2 -1.09 -2.113 -3.42 0.79 0.66 0.93 CLIP3 -0.758 -1.015 -1.64 0.79 0.67 0.94 DPYSL2 -0.913 -1.116 -2.08 0.79 0.67 0.94 EGR2 -1.661 -2.393 -2.13 0.79 0.67 0.94 FOXC1 -2.819 -1.354 -3 0.79 0.67 0.94 GPM6B -2.005 -3.323 -3.02 0.79 0.67 0.94 ITM2A -2.199 -1.847 -2.77 0.79 0.67 0.94 LDB2 -0.93 -0.7 -2.13 0.79 0.67 0.94 MALL -0.783 -0.93 -1.25 0.79 0.67 0.94 METTL7A -1.32 -1.272 -1.54 0.79 0.67 0.94 NMT2 -0.628 -1.351 -2.63 0.79 0.67 0.94 PALMD -1.144 -1.316 -2.98 0.79 0.67 0.94 SPTBN1 -0.709 -1.249 -2.05 0.79 0.66 0.93 TRIM2 -2.288 -1.663 -2.78 0.79 0.67 0.94 CRYAB -1.982 -1.709 -4.04 0.78 0.65 0.92 FABP7 -3.373 -3.82 -3.16 0.78 0.66 0.93 ICAM2 -0.993 -0.774 -1.27 0.78 0.66 0.93 PAK3 -1.249 -1.091 -2.17 0.78 0.59 0.84 PPARG -1.121 -1.302 -3.78 0.78 0.66 0.93 RGL1 -0.814 -0.807 -1.54 0.78 0.66 0.93 RPL3 -0.79 -0.833 -0.956 0.78 0.65 0.92 TESC -3.15 -1.789 -2.07 0.78 0.66 0.93 TLE4 -0.749 -0.744 -1.13 0.78 0.65 0.92 C10orf10 -1.012 -1.191 -1.95 0.77 0.65 0.91 CCDC8 -1.631 -1.483 -1.67 0.77 0.6 0.98 CCND3 -0.909 -0.791 -0.679 0.77 0.65 0.91 CLDN5 -0.909 -0.821 -2.89 0.77 0.65 0.91 DST -2.546 -3.269 -0.856 0.77 0.64 0.91 ENPP2 -0.874 -0.956 -2.91 0.77 0.65 0.91 GPC3 -1.808 -0.843 -3.41 0.77 0.65 0.92 ID4 -2.423 -2.254 -2.06 0.77 0.65 0.92 MPDZ -0.613 -0.699 -1.07 0.77 0.65 0.92 PELI1 -1.18 -0.829 -1.21 0.77 0.65 0.91 RRAD -0.868 -1.057 -1.65 0.77 0.65 0.91 SASH1 -1.294 -0.948 -2.27 0.77 0.6 0.99 TMEM100 -1.052 -0.881 -3.08 0.77 0.65 0.91 TMEM132C -0.639 -1.458 -4.06 0.77 0.6 0.99 CKMT2 -0.809 -1.828 -2.6 0.76 0.64 0.9 EEF1G -1.214 -0.954 -0.763 0.76 0.64 0.9 F10 -1.289 -0.794 -2.31 0.76 0.64 0.9 FBXW7 -1.058 -1.347 -0.822 0.76 0.59 0.97 HSPB7 -0.641 -1.5 -6.01 0.76 0.64 0.9 MID1 -2.093 -1.944 -2.85 0.76 0.64 0.9 MRAS -1.879 -1.244 -3.06 0.76 0.59 0.97 PLP1 -1.313 -1.227 -2.82 0.76 0.64 0.91 PPP1R1A -1.463 -1.691 -4.2 0.76 0.59 0.97 SOX10 -1.597 -1.772 -4.52 0.76 0.64 0.9 CAV1 -1.731 -1.307 -3.81 0.75 0.64 0.9 CNN1 -2.72 -2.297 -2.29 0.75 0.63 0.89 CPAMD8 -1.288 -1.44 -2.56 0.75 0.58 0.96 DYNC1I1 -0.666 -1.131 -0.979 0.75 0.63 0.89 KCNN4 -2.511 -2.105 -2.27 0.75 0.63 0.89 POLR1E -0.951 -1.198 -1.68 0.75 0.63 0.89 SPRY2 -2.703 -2.354 -2.29 0.75 0.63 0.89 TMTC1 -2.446 -1.729 -2.08 0.75 0.59 0.96 TRIM29 -2.464 -2.276 -2.22 0.75 0.63 0.89 AOC3 -0.994 -1.32 -4.06 0.74 0.62 0.87 C4BPA -0.972 -0.953 -2.86 0.74 0.62 0.88 C9orf40 -0.618 -0.824 -1.12 0.74 0.63 0.89 CSN3 -1.227 -0.814 -8.87 0.74 0.62 0.88 CXCL1 -3.321 -2.608 -2 0.74 0.62 0.88 DBC1 -1.321 -2.144 -3.35 0.74 0.62 0.88 EDN3 -2.608 -3.089 -2.99 0.74 0.63 0.88 FGFBP1 -1.819 -1.886 -3.68 0.74 0.63 0.88 GLT25D2 -0.901 -0.945 -2.17 0.74 0.62 0.87 ITGB4 -1.974 -0.747 -1.02 0.74 0.62 0.87 KLF4 -0.769 -0.8 -1.27 0.74 0.62 0.88 MAMDC2 -1.313 -1.958 -2.4 0.74 0.58 0.95 NAV2 -1.864 -0.951 -1.33 0.74 0.62 0.88 PENK -1.799 -0.95 -3.44 0.74 0.62 0.88 PER2 -0.872 -0.751 -0.903 0.74 0.62 0.88 TWIST2 -0.88 -0.648 -2.45 0.74 0.58 0.95 CAPN6 -2.018 -3.095 -4.89 0.73 0.61 0.87 CD59 -0.724 -1.271 -1.79 0.73 0.57 0.94 CSN2 -1.312 -0.771 -10.9 0.73 0.62 0.87 DLK1 -3.445 -1.789 -7.22 0.73 0.62 0.87 IL11RA -0.739 -1.455 -1.69 0.73 0.61 0.86 KCTD14 -1.237 -2.074 -3.1 0.73 0.62 0.87 KRT15 -3.859 -2.35 -2.74 0.73 0.62 0.87 LEPREL1 -1.488 -1.07 -1.64 0.73 0.62 0.87 LTBP4 -1.336 -0.749 -0.803 0.73 0.62 0.87 PER1 -1.593 -1.396 -2.16 0.73 0.62 0.87 PID1 -0.955 -0.759 -2.29 0.73 0.61 0.87 PIGR -1.476 -3.023 -6.21 0.73 0.57 0.93 RASIP1 -1.808 -0.767 -1.45 0.73 0.61 0.86 RBP7 -0.948 -1.759 -2.92 0.73 0.57 0.93 SFRP1 -5.802 -3.809 -3.95 0.73 0.62 0.87 SLC6A14 -0.982 -3.006 -5.65 0.73 0.62 0.87 SORBS1 -0.67 -1.472 -3.37 0.73 0.62 0.87 TRIP6 -0.624 -0.861 -0.873 0.73 0.61 0.86 CLIP4 -1.694 -2.071 -1.39 0.72 0.56 0.92 FOXO1 -0.946 -0.722 -1.68 0.72 0.61 0.86 KCNMB1 -1.439 -1.053 -0.841 0.72 0.61 0.86 MYOC -0.734 -1.525 -4.55 0.72 0.6 0.85 MYOM1 -0.657 -1.133 -2.42 0.72 0.61 0.86 RAPGEF3 -0.784 -0.867 -0.894 0.72 0.6 0.85 SLC7A10 -0.869 -1.732 -4.05 0.72 0.61 0.86 TAC1 -0.933 -2.274 -2.76 0.72 0.61 0.86 TF -1.73 -1.184 -3.11 0.72 0.61 0.85 ARHGAP10 -0.864 -0.866 -1.56 0.71 0.59 0.84 CHRDL1 -1.16 -1.895 -4.32 0.71 0.6 0.84 EPHB6 -0.872 -0.856 -1.14 0.71 0.6 0.85 FBLN5 -0.911 -0.798 -2.19 0.71 0.59 0.84 GIMAP8 -0.594 -1.545 -1.17 0.71 0.55 0.91 GPR146 -0.649 -1.313 -2.59 0.71 0.55 0.9 LALBA -1.448 -0.677 -12.4 0.71 0.6 0.84 LGR6 -1.682 -3.272 -1.76 0.71 0.56 0.91 PPAP2B -1.296 -1.101 -2.09 0.71 0.6 0.85 RELN -0.625 -1.353 -4.34 0.71 0.59 0.84 SCARA5 -2.339 -3.02 -4.21 0.71 0.55 0.91 SOD3 -1.685 -0.85 -2.44 0.71 0.6 0.84 SOX17 -1.242 -1.256 -1.22 0.71 0.56 0.92 SOX8 -1.167 -0.624 -3.27 0.71 0.55 0.91 TSLP -1.465 -0.879 -0.963 0.71 0.55 0.91 CARD6 -0.627 -0.712 -1.77 0.7 0.54 0.89 CDO1 -1.356 -1.631 -3.32 0.7 0.59 0.83 DAB2IP -1.504 -0.907 -1.02 0.7 0.54 0.89 LHX6 -0.977 -0.917 -1.51 0.7 0.59 0.83 RPL10A -0.894 -0.626 -0.799 0.7 0.54 0.89 SPRY1 -1.181 -1.275 -1.54 0.7 0.59 0.83 SYNGR1 -1.073 -0.903 -1.85 0.7 0.59 0.84 CA4 -1.227 -1.684 -5.36 0.69 0.58 0.82 DARC -1.045 -0.849 -2.64 0.69 0.58 0.82 EMCN -1.011 -1.722 -1.25 0.69 0.54 0.89 FIGF -2.413 -4.307 -5.76 0.69 0.58 0.82 HOXD10 -0.697 -0.68 -2.58 0.69 0.54 0.88 HOXD4 -0.82 -1.158 -0.805 0.69 0.54 0.89 KLK7 -1.835 -3.048 -2.96 0.69 0.54 0.88 SAA4 -1.717 -2.247 -3.61 0.69 0.58 0.82 SLC28A3 -0.993 -2.248 -3.58 0.69 0.54 0.89 STXBP1 -1.054 -0.611 -1.01 0.69 0.58 0.82 UGT8 -1.835 -1.279 -3.26 0.69 0.54 0.89 ADRB2 -0.893 -0.805 -2.36 0.68 0.57 0.8 BOC -1.132 -1.387 -2.14 0.68 0.53 0.87 MYH11 -1.834 -1.252 -2.11 0.68 0.58 0.81 PPARGC1B -0.761 -0.712 -1.43 0.68 0.53 0.87 RAB7B -0.677 -2.08 -2.33 0.68 0.53 0.87 RBPMS -0.64 -0.687 -1.42 0.68 0.58 0.81 AKAP12 -1.099 -1.541 -3.01 0.67 0.52 0.86 ATOH8 -0.978 -1.107 -2.78 0.67 0.52 0.86 EDN1 -1.815 -1.1 -1.55 0.67 0.53 0.87 IGFBP6 -1.454 -1.817 -2.67 0.67 0.56 0.79 KIT -3.628 -3.469 -4.38 0.67 0.57 0.8 LHFP -0.915 -0.838 -1.59 0.67 0.57 0.8 MAP7D3 -0.978 -0.683 -2.39 0.67 0.56 0.8 TSHZ2 -1.784 -1.865 -2.34 0.67 0.52 0.86 ABCA8 -0.618 -1.14 -3.32 0.66 0.55 0.78 AHNAK -0.997 -1.231 -1.33 0.66 0.55 0.78 AQP1 -1.226 -0.601 -1.44 0.66 0.55 0.78 ATP1A2 -1.912 -1.816 -2.4 0.66 0.56 0.79 C1QTNF9 -0.752 -0.725 -2.35 0.66 0.51 0.85 C9orf125 -0.941 -0.972 -1.63 0.66 0.56 0.79 CDKN1C -1.592 -1.349 -2.14 0.66 0.56 0.79 CRHBP -0.66 -1.456 -4.59 0.66 0.56 0.78 EPHA2 -1.606 -0.674 -2.18 0.66 0.56 0.79 MEOX1 -1.258 -1.47 -2.95 0.66 0.56 0.79 NDRG2 -2.244 -3.001 -2.59 0.66 0.55 0.78 PIK3R1 -1.15 -1.482 -0.874 0.66 0.56 0.79 ROBO4 -0.668 -1.037 -2.12 0.66 0.51 0.84 SEMA6A -1.568 -0.644 -2.16 0.66 0.52 0.85 CYYR1 -1.156 -2.125 -2.37 0.65 0.5 0.83 IL33 -0.946 -0.96 -2.55 0.65 0.55 0.77 MXI1 -0.99 -1.129 -1.46 0.65 0.55 0.77 NTRK2 -1.123 -2.864 -3.55 0.65 0.5 0.83 ACSS2 -0.672 -1.014 -1.4 0.64 0.5 0.82 EIF4B -0.597 -0.872 -1.17 0.64 0.54 0.77 HOXA4 -2.285 -1.749 -2.7 0.64 0.54 0.77 JAM2 -1.06 -2.069 -1.98 0.64 0.5 0.83 RPL22 -0.653 -0.771 -1.4 0.64 0.54 0.76 RUNDC3B -0.652 -2.181 -1.83 0.64 0.5 0.83 CCL14 -1.066 -1.54 -3.38 0.63 0.53 0.74 HOXA3 -0.885 -2.151 -2.87 0.63 0.49 0.81 TCF7L1 -1.719 -1.2 -2.58 0.63 0.53 0.75 TNRC6B -0.772 -0.618 -0.615 0.63 0.49 0.81 C2orf40 -1.882 -2.853 -3.7 0.62 0.48 0.79 TGFBR3 -2.138 -1.277 -2.79 0.62 0.48 0.79 HOXA7 -2.497 -1.233 -3.05 0.61 0.47 0.78 INPP1 -0.958 -1.022 -1.25 0.61 0.51 0.72 IRX1 -0.988 -1.251 -3.68 0.61 0.47 0.78 RYR3 -1.16 -1.007 -2.01 0.61 0.51 0.73 STOX2 -1.345 -1.805 -1.93 0.61 0.47 0.78 ITIH5 -1.638 -2.013 -4.02 0.6 0.47 0.77 NFAT5 -0.818 -0.66 -0.705 0.6 0.47 0.78 PDE2A -0.911 -0.97 -2.51 0.6 0.5 0.71 SV2B -0.699 -0.776 -2.55 0.6 0.47 0.78 GDF10 -1.395 -1.83 -2.92 0.59 0.49 0.7 RBMS3 -0.937 -1.261 -1.46 0.59 0.46 0.76 SDPR -2.515 -2.302 -3.35 0.59 0.46 0.76 FAM107A -1.407 -2.062 -2.45 0.58 0.49 0.69 PPL -1.164 -0.839 -1.77 0.57 0.48 0.68 SH3BGRL2 -0.648 -1.918 -2.54 0.57 0.44 0.73 RUNX1T1 -1.523 -0.992 -2.23 0.56 0.44 0.73 SLC25A27 -1.746 -2.343 -1.83 0.56 0.43 0.72 TSPAN11 -0.793 -1.11 -2.13 0.56 0.44 0.73 TSPAN7 -1.25 -1.059 -2.46 0.55 0.46 0.66 CMTM7 -1.531 -1.785 -1.8 0.54 0.42 0.7 FREM1 -2.005 -2.133 -2.65 0.48 0.37 0.62