Title: Transcriptomics-based screening of molecular signatures associated with patients overall survival and their key regulators in subtypes of breast cancer
Supplementary_File_4:LuminalB_candidate_prognostic_markers
GeneName	GSE10886_logFC	GSE26304_logFC	GSE59246_logFC	HR	HR_Lower	HR_Higher
MRPS17	0.86	0.83	0.875	1.93	1.58	2.35
CENPA	1.924	1.366	2.59	1.74	1.43	2.11
FAHD1	0.975	0.758	0.684	1.66	1.21	2.27
H2AFV	1.179	1.346	1.36	1.66	1.36	2.01
ANAPC11	1.03	1.087	1.01	1.64	1.2	2.24
ORMDL2	1.122	0.843	1.13	1.64	1.35	1.99
COPB2	0.888	0.767	0.819	1.6	1.32	1.94
DTL	1.878	1.511	2.4	1.6	1.32	1.94
HLTF	1.106	1.072	1.03	1.6	1.31	1.94
HN1	1.42	1.483	2.03	1.59	1.17	2.17
COX17	1.241	1.019	1.31	1.56	1.28	1.89
PAFAH1B3	1.28	1.143	1.43	1.56	1.28	1.9
SAP30	1.408	0.851	1.57	1.55	1.28	1.88
TSPAN13	1.915	1.398	2	1.55	1.27	1.88
ASPM	2.521	1.838	3.36	1.52	1.25	1.84
ECT2	1.467	0.646	1.47	1.52	1.25	1.84
NEK2	2.577	1.736	4.05	1.52	1.25	1.84
BLVRA	0.908	1.096	1.12	1.51	1.24	1.83
C12orf48	1.359	0.784	1.46	1.51	1.24	1.83
KIFC1	0.967	0.894	2.35	1.49	1.23	1.81
NVL	1.006	0.716	1.47	1.49	1.23	1.81
TMEM14A	1.334	0.792	1.28	1.48	1.22	1.8
CEP55	2.6	1.734	3.42	1.47	1.21	1.78
RIBC2	1.096	1.075	2.17	1.46	1.2	1.77
RPE	0.764	0.996	0.699	1.46	1.07	1.99
ARPC3	1.155	0.648	0.967	1.45	1.2	1.76
ATP5I	0.793	0.737	0.726	1.45	1.2	1.77
LAGE3	0.627	0.585	1.11	1.45	1.19	1.76
ZWILCH	0.688	0.749	1.2	1.45	1.07	1.98
GPSM2	1.873	0.689	1.37	1.44	1.19	1.75
E2F8	2.277	2.215	3.03	1.42	1.17	1.72
NDC80	2.122	0.906	2	1.42	1.17	1.72
SRP9	1.884	0.74	1.19	1.42	1.17	1.73
BUB3	1.109	0.762	1.26	1.41	1.16	1.71
C11orf48	0.966	0.675	0.828	1.41	1.17	1.71
CENPE	1.958	0.796	2.42	1.39	1.15	1.69
KIF4A	0.792	0.71	2.92	1.39	1.14	1.68
NDUFB1	0.649	1.051	0.9	1.39	1.15	1.69
PYCR1	0.735	1.074	1.16	1.39	1.15	1.69
AGR3	3.073	3.266	4.47	1.38	1.11	1.85
RMI1	1.553	0.838	1.41	1.38	1.14	1.67
DEPDC1B	1.98	1.111	2.28	1.37	1.01	1.86
GJB2	3.971	3.028	5.02	1.37	1	1.86
TDG	0.813	0.86	0.759	1.37	1.13	1.66
BZW1	1.008	1.276	1.25	1.36	1.12	1.65
HMGN1	0.723	0.719	0.819	1.35	1.11	1.64
SMYD3	0.699	0.922	1.23	1.35	1.12	1.64
PSMB3	0.981	0.701	1.05	1.34	1.1	1.62
HSD17B6	1.844	1.306	2.54	1.33	1.1	1.61
STIL	0.67	0.856	1.75	1.33	1.1	1.62
WWP1	2.088	1.12	1.68	1.32	1.09	1.61
ATP5E	1.128	0.876	1.06	1.31	1.08	1.58
MORF4L2	0.62	0.799	0.914	1.31	1.08	1.59
MTDH	1.381	1.175	0.771	1.31	1.08	1.59
C9orf116	1.016	1.333	2.36	1.3	1.08	1.58
COL10A1	4.472	4.706	5.76	1.3	1.07	1.58
KIAA1598	1.028	0.794	1.74	1.3	1.07	1.58
ZMPSTE24	0.952	0.706	0.857	1.3	1.07	1.58
CENPF	2.312	1.283	3.26	1.29	1.06	1.56
HIST1H2BD	1.722	1.884	2.27	1.29	1.06	1.56
KIF18A	1.44	1.105	1.4	1.29	1.07	1.57
CENPM	0.817	0.68	1.91	1.28	1.06	1.55
GPRC5A	1.119	2.972	2.83	1.28	1.05	1.55
ATP5H	0.988	0.654	0.677	1.27	1.05	1.54
LMNB1	2.366	1.343	1.31	1.27	1.05	1.54
TCEB1	1.101	0.695	0.96	1.27	1.05	1.54
UBL5	1.092	0.987	1.13	1.27	1.04	1.53
VAMP8	0.611	0.816	1.48	1.27	1.04	1.53
C5orf30	1.202	1.548	0.951	1.26	1.04	1.53
MYCBP	1.234	1.009	1.66	1.26	1.04	1.53
RAD21	1.355	0.705	0.901	1.26	1.04	1.53
SULF1	1.679	2.312	2.12	1.26	1.04	1.53
ARFGEF1	1.263	0.61	1.06	1.25	1.03	1.51
BIK	0.69	0.783	3.03	1.25	1.03	1.51
POLR3K	1	0.685	1.16	1.25	1.03	1.51
RAD51	1.576	1.182	1.86	1.25	1.04	1.52
C1orf27	1	0.828	1.11	1.24	1.02	1.5
GALNT7	1.315	1.441	2.34	1.24	1.03	1.51
HIST1H2BJ	0.975	0.818	2.03	1.24	1.02	1.5
NEK4	1.245	0.874	0.818	1.24	1.02	1.5
RAP2C	0.843	0.834	1.6	1.24	1.03	1.51
SHCBP1	1.077	0.714	1.8	1.24	1.02	1.5
SMARCA5	1.043	0.643	0.722	1.24	1.02	1.5
TK1	1.86	1.648	2.51	1.24	1.03	1.51
MMP11	3.734	3.692	5.18	1.23	1.02	1.5
MTERFD1	1.117	0.656	1.45	1.23	1.01	1.49
RNPEP	0.72	0.695	1.71	1.23	1.02	1.49
KRT18	0.96	1.345	1.36	1.22	1.01	1.48
PMAIP1	2.116	1.14	1.45	1.22	1.01	1.48
DYNLT3	1.031	1.505	1.31	1.21	1	1.47
ERO1L	0.84	0.814	1.15	1.21	1	1.47
PLEKHF2	2.143	1.08	1.83	1.21	1	1.47
DEFB1	-1.853	-1.919	-2.55	0.82	0.67	0.99
F10	-1.518	-0.901	-2.7	0.82	0.67	0.99
FNDC4	-0.67	-0.813	-2.17	0.82	0.67	0.99
HYAL1	-0.876	-0.592	-1.88	0.82	0.67	0.99
PALMD	-1.432	-1.486	-3.44	0.82	0.68	0.99
RPL3	-1.268	-0.943	-1.26	0.82	0.67	0.99
SATB1	-1.442	-1.059	-1.65	0.82	0.68	0.99
SLC27A6	-1.568	-2.121	-2.73	0.82	0.68	1
TGFA	-1.676	-0.794	-1.76	0.82	0.68	0.99
C16orf5	-0.771	-0.677	-1.24	0.81	0.67	0.98
ENPP2	-1.539	-0.915	-3.42	0.81	0.67	0.99
EPHA2	-1.965	-0.802	-2.13	0.81	0.66	0.98
FBLN5	-1.216	-0.988	-2.82	0.81	0.67	0.98
FGFBP1	-2.387	-1.899	-4.41	0.81	0.67	0.98
LPHN3	-0.729	-1.838	-3.27	0.81	0.67	0.98
MFGE8	-1.271	-1.541	-3.82	0.81	0.66	0.98
PTN	-3.285	-3.22	-2.97	0.81	0.67	0.98
SIRPA	-0.973	-1.363	-2.58	0.81	0.67	0.99
TF	-1.797	-1.678	-3.7	0.81	0.67	0.98
TGFBR2	-1.83	-1.261	-2.56	0.81	0.67	0.98
TRIM2	-2.291	-2.102	-3.2	0.81	0.67	0.98
ZBTB16	-1.579	-0.875	-2.92	0.81	0.67	0.98
ABCG5	-0.993	-0.706	-1.56	0.8	0.66	0.97
ANPEP	-1.05	-1.546	-2.27	0.8	0.66	0.96
APOLD1	-1.262	-0.986	-2	0.8	0.66	0.97
BEGAIN	-1.405	-1.262	-1.46	0.8	0.66	0.97
CXCL12	-1.728	-1.057	-2.88	0.8	0.66	0.96
EGF	-1.847	-1.58	-3.67	0.8	0.66	0.96
FIGF	-2.76	-4.488	-6.78	0.8	0.66	0.97
HOXA4	-2.704	-2.178	-3.22	0.8	0.66	0.97
HOXA9	-0.738	-2.933	-3.5	0.8	0.66	0.96
KIT	-4.699	-4.121	-5.39	0.8	0.66	0.97
KRT15	-4.57	-3.119	-4.45	0.8	0.66	0.97
LAMB3	-3.913	-2.507	-2.54	0.8	0.66	0.97
LEPREL1	-1.707	-1.423	-2.42	0.8	0.66	0.97
NMT2	-0.777	-1.605	-3.35	0.8	0.66	0.97
PLP1	-1.535	-1.447	-3.93	0.8	0.66	0.98
RRAD	-1.006	-1.435	-2.56	0.8	0.66	0.97
TAC1	-1.445	-2.505	-3.97	0.8	0.66	0.97
CSN1S1	-2.663	-0.586	-9.91	0.79	0.65	0.95
CX3CL1	-4.131	-2.927	-3.53	0.79	0.65	0.96
DBC1	-1.744	-2.482	-3.94	0.79	0.65	0.96
DMD	-1.537	-2.762	-3.29	0.79	0.66	0.96
EGR1	-3.822	-2.049	-2.04	0.79	0.65	0.95
LRRC2	-0.587	-0.606	-1.48	0.79	0.65	0.95
LTBP4	-1.497	-0.95	-1.09	0.79	0.65	0.95
NCALD	-1.989	-2.399	-2.45	0.79	0.65	0.96
NDRG2	-2.818	-3.211	-3.32	0.79	0.65	0.95
PPAP2B	-1.56	-1.524	-2.6	0.79	0.65	0.96
SOX10	-1.93	-1.975	-5.8	0.79	0.65	0.95
ADH1A	-1.308	-1.952	-5.24	0.78	0.64	0.94
ARID5B	-0.775	-0.968	-2.03	0.78	0.65	0.95
ATF3	-2.28	-1.43	-2	0.78	0.64	0.95
BCL11A	-1.402	-1.715	-3.87	0.78	0.64	0.94
KIAA0408	-0.933	-0.891	-2.64	0.78	0.64	0.95
MSRA	-0.693	-1.035	-1.78	0.78	0.65	0.95
PTX3	-2.05	-2.127	-3.21	0.78	0.65	0.95
RGL1	-1.134	-1.045	-1.58	0.78	0.65	0.95
ADH1C	-0.834	-1.492	-4.66	0.77	0.64	0.94
EPHB6	-0.951	-0.9	-1.78	0.77	0.64	0.94
GDF10	-1.61	-2.507	-3.87	0.77	0.63	0.93
GPRASP1	-1.374	-1.294	-1.1	0.77	0.63	0.93
IGFBP6	-1.801	-1.987	-3.24	0.77	0.64	0.94
MPPED2	-0.689	-0.771	-2.22	0.77	0.63	0.93
PENK	-2.063	-0.963	-3.9	0.77	0.63	0.93
ADORA1	-0.737	-1.076	-2.85	0.76	0.63	0.92
ATP1A2	-1.687	-2.882	-3.28	0.76	0.62	0.92
BNC1	-1.124	-1.472	-4.12	0.76	0.62	0.92
CAPN6	-2.721	-3.556	-6.37	0.76	0.63	0.92
COLEC11	-0.692	-0.921	-2.1	0.76	0.62	0.92
CSN3	-1.246	-0.732	-9.6	0.76	0.62	0.92
DYNC1I1	-0.756	-1.231	-1.37	0.76	0.63	0.92
FAM107A	-1.529	-2.215	-3.4	0.76	0.63	0.92
GYPC	-1.071	-0.601	-2.27	0.76	0.63	0.93
ITGB4	-2.588	-0.787	-1.78	0.76	0.62	0.92
PIK3C2G	-1.642	-2.61	-4.34	0.76	0.63	0.92
PTHLH	-1.763	-2.062	-3.44	0.76	0.63	0.92
RNF186	-0.909	-2.118	-5.3	0.76	0.62	0.92
TCF7L1	-1.962	-1.643	-3.45	0.76	0.63	0.92
TLN2	-0.943	-0.62	-1.51	0.76	0.63	0.92
ALDH1L1	-0.658	-0.942	-4.27	0.75	0.62	0.91
ICAM2	-1.099	-0.893	-1.73	0.75	0.62	0.91
PLSCR4	-0.774	-1.324	-2.27	0.75	0.62	0.91
SLC6A14	-1.353	-3.401	-6.61	0.75	0.62	0.91
SOD3	-2.64	-1.161	-3.9	0.75	0.62	0.91
TENC1	-0.935	-0.615	-1.33	0.75	0.62	0.91
ANGPTL7	-1.64	-3.757	-3.43	0.74	0.61	0.9
KLK5	-2.362	-3.255	-4.18	0.74	0.61	0.9
LARP6	-1.321	-0.992	-2.47	0.74	0.61	0.9
MLXIPL	-1.468	-0.722	-2.85	0.74	0.61	0.89
SAA4	-2.122	-2.525	-4.49	0.74	0.61	0.89
SFRP1	-7.775	-4.706	-5.53	0.74	0.61	0.9
TMTC1	-2.422	-1.939	-2.45	0.74	0.54	1
VIPR1	-0.769	-1.129	-1.18	0.74	0.61	0.89
ARHGEF4	-1.487	-1.4	-2.5	0.73	0.6	0.88
C4BPA	-1.122	-1.096	-3.23	0.73	0.61	0.89
CKMT2	-1.161	-1.781	-2.7	0.73	0.6	0.88
CSN2	-1.352	-0.711	-11.1	0.73	0.6	0.88
CYYR1	-1.349	-2.541	-2.95	0.73	0.54	1
DLC1	-1.245	-0.899	-3.06	0.73	0.61	0.89
LETMD1	-0.678	-0.971	-0.971	0.73	0.6	0.88
MYOM1	-0.888	-1.47	-2.99	0.73	0.6	0.88
PZP	-1.141	-0.846	-1.77	0.73	0.6	0.89
SH3BGRL2	-0.908	-2.174	-2.78	0.73	0.54	0.99
SLC34A2	-0.911	-1.363	-4.95	0.73	0.6	0.88
TGFBR3	-2.734	-1.539	-3.86	0.73	0.54	1
TP63	-2.274	-3.313	-1.74	0.73	0.6	0.88
CDO1	-2.04	-1.926	-3.75	0.72	0.59	0.87
EFCAB1	-1.075	-2.254	-2.48	0.72	0.59	0.87
FAHD2A	-0.675	-0.621	-0.799	0.72	0.53	0.98
FOLR1	-3.094	-2.085	-4.36	0.72	0.6	0.88
IL17B	-2.085	-2.676	-3.61	0.72	0.59	0.88
KRT13	-3.498	-2.878	-4.31	0.72	0.6	0.88
MAP2K3	-0.866	-0.6	-1.43	0.72	0.59	0.87
NRG2	-1.952	-3.627	-3.81	0.72	0.53	0.97
RYR1	-1.043	-1.738	-1.86	0.72	0.6	0.88
SNCA	-0.701	-1.52	-1.18	0.72	0.53	0.98
STAC2	-1.693	-2.889	-4.7	0.72	0.53	0.98
TNMD	-1.353	-2.351	-6.45	0.72	0.59	0.87
ZCCHC11	-0.81	-1.324	-0.943	0.72	0.59	0.87
ATOH8	-1.14	-1.238	-3.21	0.71	0.52	0.96
BACH2	-0.95	-0.745	-2.27	0.71	0.58	0.86
CA3	-0.982	-2.855	-2.8	0.71	0.59	0.87
ERG	-1.142	-1.087	-2.17	0.71	0.59	0.87
FABP7	-3.269	-4.287	-4.68	0.71	0.58	0.86
KCNMB1	-1.268	-1.51	-1.09	0.71	0.59	0.86
MAP2K6	-0.865	-1.931	-1.73	0.71	0.59	0.86
PPARA	-0.638	-1.001	-1.65	0.71	0.52	0.96
RAPGEF3	-1.317	-1.011	-1.09	0.71	0.59	0.86
RELN	-0.718	-1.322	-4.99	0.71	0.59	0.87
RPL10A	-0.983	-0.706	-0.907	0.71	0.52	0.97
TSPAN7	-1.378	-1.372	-3.18	0.71	0.58	0.86
ADRB2	-1.29	-0.997	-2.78	0.7	0.58	0.85
AK5	-2.552	-2.403	-2.43	0.7	0.58	0.85
ARHGEF6	-0.85	-1.041	-1.89	0.7	0.58	0.85
CCDC82	-1.05	-1.933	-1.23	0.7	0.51	0.95
CFI	-1.253	-1.51	-1.11	0.7	0.58	0.85
DAB2IP	-1.902	-1.023	-1.66	0.7	0.52	0.95
GLT25D2	-0.945	-0.908	-2.56	0.7	0.58	0.85
HOXA5	-2.585	-2.058	-3.33	0.7	0.58	0.85
IL11RA	-1.048	-1.702	-2.02	0.7	0.58	0.85
BMP6	-0.781	-0.641	-2.78	0.69	0.57	0.84
CMTM7	-1.815	-1.672	-2.5	0.69	0.51	0.94
COL17A1	-4.559	-3.575	-3.54	0.69	0.57	0.83
CRISPLD1	-2.417	-1.911	-2.76	0.69	0.51	0.94
FOXC1	-3.241	-1.681	-3.44	0.69	0.57	0.84
RPL13	-1.617	-1.138	-1.56	0.69	0.51	0.94
RPS9	-1.042	-0.769	-1.54	0.69	0.57	0.83
SAT2	-0.814	-0.617	-0.753	0.69	0.51	0.95
AMPD1	-0.668	-1.133	-2.8	0.68	0.56	0.83
CXCL1	-3.999	-2.775	-2.7	0.68	0.56	0.83
DARC	-1.815	-1.092	-3.72	0.68	0.56	0.82
EGR2	-1.901	-2.351	-2.31	0.68	0.56	0.82
GNL1	-0.659	-1.221	-1.08	0.68	0.5	0.93
HOXA7	-2.947	-1.649	-3.66	0.68	0.5	0.92
LGR6	-2.022	-3.569	-2.44	0.68	0.5	0.92
LIF	-1.372	-1.051	-2.37	0.68	0.56	0.83
MEOX1	-1.351	-1.696	-3.63	0.68	0.56	0.83
NTRK3	-0.83	-1.055	-2.08	0.68	0.56	0.83
TESC	-3.407	-2.255	-2.96	0.68	0.56	0.83
TSC22D1	-1.584	-1.249	-0.919	0.68	0.5	0.92
TSHZ2	-2.216	-2.31	-3.2	0.68	0.5	0.93
BIN1	-0.906	-0.992	-2.08	0.67	0.55	0.82
C9orf125	-0.935	-1.401	-2.35	0.67	0.55	0.81
CCL28	-3.814	-3.308	-4.93	0.67	0.49	0.92
CPAMD8	-1.89	-2.07	-2.86	0.67	0.49	0.91
CPEB1	-1.075	-0.77	-1.47	0.67	0.49	0.92
EDA	-0.598	-0.655	-1.77	0.67	0.55	0.81
HMBOX1	-0.759	-0.809	-1.22	0.67	0.49	0.91
PHLDA1	-1.19	-1.796	-3.05	0.67	0.49	0.92
PPP1R12B	-1.378	-1.355	-1.01	0.67	0.55	0.81
TSLP	-1.847	-0.797	-1.11	0.67	0.49	0.91
CCND2	-1.456	-0.754	-2.42	0.66	0.54	0.79
SMR3B	-0.881	-1.408	-3.58	0.66	0.55	0.81
CA4	-1.294	-1.645	-6.1	0.65	0.54	0.79
FAM117A	-1.052	-0.718	-1.2	0.65	0.54	0.79
IL33	-1.336	-1.23	-3.28	0.65	0.54	0.79
KLHL29	-3.005	-2.548	-2.33	0.65	0.48	0.89
NCOA7	-0.787	-1.682	-1.65	0.65	0.48	0.89
ITM2A	-2.333	-2.583	-3.1	0.64	0.53	0.78
VIT	-2.347	-2.911	-2.16	0.64	0.47	0.88
ACSS2	-0.675	-1.06	-1.61	0.63	0.46	0.86
RPS14	-0.784	-0.844	-1.39	0.63	0.46	0.85
SEMA3G	-1.354	-0.615	-3.18	0.63	0.52	0.77
INPP1	-1.373	-1.22	-1.56	0.62	0.51	0.75
SLC25A37	-1.718	-0.938	-1	0.61	0.44	0.83
DNASE1L3	-0.914	-2.089	-2.69	0.6	0.49	0.73
ITIH5	-2.303	-2.285	-4.15	0.6	0.44	0.82
PIGR	-1.53	-2.831	-8.79	0.6	0.44	0.82
STOX2	-1.78	-1.907	-2.47	0.6	0.44	0.82
KCNH8	-0.971	-2.009	-2.64	0.59	0.43	0.8
KLK7	-2.02	-3.321	-4.06	0.59	0.43	0.81
CLIP4	-1.102	-2.107	-1.78	0.58	0.7	0.99
SV2B	-0.651	-0.656	-2.79	0.58	0.42	0.8
ABCB1	-1.234	-1.276	-1.43	0.57	0.47	0.69
SLC25A27	-1.592	-2.464	-2.38	0.57	0.42	0.79
HOXD10	-0.786	-0.807	-2.82	0.55	0.41	0.76
IL22RA2	-0.745	-1.169	-3.08	0.55	0.4	0.76
NFAT5	-0.749	-1.031	-0.986	0.54	0.39	0.73
TSPAN11	-0.998	-1.588	-2.39	0.52	0.38	0.71
FREM1	-2.933	-2.72	-2.96	0.47	0.34	0.65