# testing putative ancestral states # CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 M ND2 W -C -Y -16S -V -Q -12S NCR I # CO1 L2 S2 -ND1 -L1 -16S -V -Q CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB -12S NCR I M ND2 W -C -Y # score 2 # testing putative ancestral states # CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 M ND2 W -C -Y -16S -V -Q -12S NCR I # CO1 L2 S2 -ND1 -L1 -16S -V -Q CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB -12S NCR I M ND2 W -C -Y # score 2 # testing putative ancestral states # CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -12S NCR -L1 M ND2 W -C -Y -16S -V -Q I # CO1 L2 S2 -ND1 -L1 -16S -V -Q CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB -12S NCR I M ND2 W -C -Y # score 2 # testing putative ancestral states # CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -12S NCR -L1 M ND2 W -C -Y -16S -V -Q I # CO1 L2 S2 -ND1 -L1 -16S -V -Q CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB -12S NCR I M ND2 W -C -Y # score 2 # testing putative ancestral states # CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -12S M ND2 W -C -Y -16S -V NCR -L1 -Q I # CO1 L2 S2 -ND1 -L1 -16S -V -Q CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB -12S NCR I M ND2 W -C -Y # score 2 # testing putative ancestral states # CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -12S M ND2 W -C -Y -16S -V NCR -L1 -Q I # CO1 L2 S2 -ND1 -L1 -16S -V -Q CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB -12S NCR I M ND2 W -C -Y # score 2 minscore=2 2nd minscore 2 # testing putative ancestral states # CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -12S M ND2 W -C -Y -16S -V NCR -L1 -Q I # CO1 L2 S2 -ND1 -L1 -16S -V -Q CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB -12S NCR I M ND2 W -C -Y # score 2 # testing putative ancestral states # CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -12S M ND2 W -C -Y -16S -V NCR -L1 -Q I # CO1 L2 S2 -ND1 -L1 -16S -V -Q CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB -12S NCR I M ND2 W -C -Y # score 2 # testing putative ancestral states # CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -Q -12S M ND2 W -C -Y -16S -V NCR I # CO1 L2 S2 -ND1 -L1 -16S -V -Q CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB -12S NCR I M ND2 W -C -Y # score 2 # testing putative ancestral states # CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -Q -12S M ND2 W -C -Y -16S -V NCR I # CO1 L2 S2 -ND1 -L1 -16S -V -Q CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB -12S NCR I M ND2 W -C -Y # score 2 # testing putative ancestral states # CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 M ND2 W -C -Y -16S -V -Q -12S NCR I # CO1 L2 S2 -ND1 -L1 -16S -V -Q CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB -12S NCR I M ND2 W -C -Y # score 2 # testing putative ancestral states # CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 M ND2 W -C -Y -16S -V -Q -12S NCR I # CO1 L2 S2 -ND1 -L1 -16S -V -Q CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB -12S NCR I M ND2 W -C -Y # score 2 minscore=2 2nd minscore 2 minscore=2 2nd minscore 2 # testing putative ancestral states # CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -Q -12S -V NCR I M ND2 W -C -Y # CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -V -12S NCR I -Q M ND2 W -C -Y # score 2 # testing putative ancestral states # CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -Q -12S -V NCR I M ND2 W -C -Y # CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -V -12S NCR I -Q M ND2 W -C -Y # score 2 # testing putative ancestral states # CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -V -Q -12S NCR I M ND2 W -C -Y # CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -V -12S NCR I -Q M ND2 W -C -Y # score 1 # testing putative ancestral states # CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -V -Q -12S NCR I M ND2 W -C -Y # CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -V -12S NCR I -Q M ND2 W -C -Y # score 1 minscore=1 2nd minscore 1 # testing putative ancestral states # CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -V -Q -12S NCR I M ND2 W -C -Y # CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -V -12S NCR I -Q M ND2 W -C -Y # score 1 # testing putative ancestral states # CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -V -Q -12S NCR I M ND2 W -C -Y # CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -V -12S NCR I -Q M ND2 W -C -Y # score 1 # testing putative ancestral states # CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -Q -12S -V NCR I M ND2 W -C -Y # CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -V -12S NCR I -Q M ND2 W -C -Y # score 2 # testing putative ancestral states # CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -Q -12S -V NCR I M ND2 W -C -Y # CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -V -12S NCR I -Q M ND2 W -C -Y # score 2 minscore=1 2nd minscore 1 minscore=1 2nd minscore 1 >A18 >A15 CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -V -Q -12S NCR I M ND2 W -C -Y >A2 CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -Q -12S -V NCR I M ND2 W -C -Y >Lophopotamon yenyuanense CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -Q -12S -V NCR I M ND2 W -C -Y >A1 CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -Q -12S -V NCR I M ND2 W -C -Y >Potamiscus motuoensis CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -Q -12S -V NCR I M ND2 W -C -Y >A0 CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -Q -12S -V NCR I M ND2 W -C -Y >Tenuipotamon yuxiense CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -Q -12S NCR -V I M ND2 W -C -Y >Potamiscus yongshengensis CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -Q -12S -V NCR I M ND2 W -C -Y >A14 CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -V -Q -12S NCR I M ND2 W -C -Y >A3 CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -V -Q -12S NCR I M ND2 W -C -Y >Potamiscus montosus CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -V -Q -12S NCR I M ND2 W -C -Y >Potamiscus yiwuensis CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -V -Q -12S NCR I M ND2 W -C -Y >A13 CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -V -Q -12S NCR I M ND2 W -C -Y >A9 CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -V -Q -12S NCR I M ND2 W -C -Y >A8 CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 M ND2 W -C -Y -16S -V -Q -12S NCR I >A7 CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 M ND2 W -C -Y -16S -V -Q -12S NCR I >A4 CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 M ND2 W -C -Y -16S -V -Q -12S NCR I >Sinopotamon parvum CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 M ND2 W -C -Y -16S -V -Q -12S NCR I >Tenuilapotamon latilum latilum CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 M ND2 W -C -Y -16S -V -Q -12S NCR I >A6 CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 M ND2 W -C -Y -16S -V -Q -12S NCR I >A5 CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 M ND2 W -C -Y -16S -V -Q -12S NCR I >Sinopotamon xiushuiense CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 M ND2 W -C -Y -16S -V -Q -12S NCR I >Sinopotamon yangtsekiense CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 M ND2 W -C -Y -16S -V -Q -12S NCR I >Sinopotamon yaanense CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 M ND2 W -C -Y -16S -V -Q -12S NCR I >Parapotamon spinescens CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -12S M ND2 W -C -Y -16S -V NCR -L1 -Q I >Neilupotamon sinense CO1 L2 S2 -ND1 -L1 -16S -V -Q CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB -12S NCR I M ND2 W -C -Y >A12 CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -V -Q -12S NCR I M ND2 W -C -Y >A10 CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -V -Q -12S NCR I M ND2 W -C -Y >Apotamonautes hainanensis bawanglingensis CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -V -Q -12S NCR I M ND2 W -C -Y >Huananpotamon lichuanense CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -V -Q -12S NCR I M ND2 W -C -Y >A11 CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -V -Q -12S NCR I M ND2 W -C -Y >Geothelphusa dehaani CO1 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L2 -L1 -16S -V -Q -12S NCR I M ND2 W -C -Y >Candidiopotamon okinawense CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -V -Q -12S NCR I M ND2 W -C -Y >A17 CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -V -12S NCR I -Q M ND2 W -C -Y >Scylla olivacea CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -V -12S NCR I -Q M ND2 W -C -Y >A16 CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -V -12S NCR I -Q M ND2 W -C -Y >Pachygrapsus crassipes CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -V -12S NCR I -Q M ND2 W -C -Y >Ocypode ceratophthalmus CO1 L2 CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E -H -F -ND5 -ND4 -ND4L T -P ND6 CYTB S2 -ND1 -L1 -16S -V -12S NCR I -Q M ND2 W -C -Y scenario to A18 Empty scenario to A15 Empty scenario to A2 transposition(V ,Q 12S ,) scenario to Lophopotamon yenyuanense Empty scenario to A1 Empty scenario to Potamiscus motuoensis Empty scenario to A0 Empty scenario to Tenuipotamon yuxiense transposition(V ,NCR ,) scenario to Potamiscus yongshengensis Empty scenario to A14 Empty scenario to A3 Empty scenario to Potamiscus montosus Empty scenario to Potamiscus yiwuensis Empty scenario to A13 Empty scenario to A9 Empty scenario to A8 transposition(16S V Q 12S NCR I ,M ND2 W C Y ,) scenario to A7 Empty scenario to A4 Empty scenario to Sinopotamon parvum Empty scenario to Tenuilapotamon latilum latilum Empty scenario to A6 Empty scenario to A5 Empty scenario to Sinopotamon xiushuiense Empty scenario to Sinopotamon yangtsekiense Empty scenario to Sinopotamon yaanense Empty scenario to Parapotamon spinescens alternative( ordered[ transposition(L1 16S V Q M ND2 W C Y ,12S NCR ,) , transposition(L1 NCR ,16S V M ND2 W C Y ,) ] complete=1 , ordered[ transposition(16S V M ND2 W C Y ,Q 12S ,) , transposition(L1 Q ,16S V 12S NCR M ND2 W C Y ,) ] complete=1 ,) complete=1 scenario to Neilupotamon sinense transposition(CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E H F ND5 ND4 ND4L T P ND6 CYTB ,S2 ND1 L1 16S V Q ,) scenario to A12 Empty scenario to A10 Empty scenario to Apotamonautes hainanensis bawanglingensis Empty scenario to Huananpotamon lichuanense Empty scenario to A11 Empty scenario to Geothelphusa dehaani inverse transposition(L2 ,CO2 K D ATP8 ATP6 CO3 G ND3 A R N S1 E H F ND5 ND4 ND4L T P ND6 CYTB S2 ND1 ,) scenario to Candidiopotamon okinawense Empty scenario to A17 Empty scenario to Scylla olivacea Empty scenario to A16 Empty scenario to Pachygrapsus crassipes Empty scenario to Ocypode ceratophthalmus Empty