Contributors: Laura Multini
... Filtered SNP dataset genotyped for 376 specimens of Anopheles cruzii from Sao Paulo, Brazil.
Contributors: Joseph Donfack, Brian Eckenrode, Traci Carlson, Katherine Jones
... Sequences of 15 keratin proteins (i.e., KRT31-36, KRT38-KRT40 and KRT81-84 and KRT86) were downloaded from Uniprot database (version 2016.05.10) and edited to generate a variant keratin protein sequence database. Each variant protein sequence contained a single SAP derived from a nsSNP with a frequency >0.1% in populations of European and African American descent, as listed in the National Center for Biotechnology Information (NCBI) SNP database (http://evs.gs.washington.edu/EVS/).
Contributors: Andrew Siedlecki
... miR-218-2 global knockout nucleotide sequences
High-throughput sequencing of Precise CRISPR/Cas9-targeted Recessive Dystrophic Epidermolysis Bullosa immortalised keratinocytes (Ion Torrent)
Contributors: Oliver March
... In this study, the COL7A1 on-target (exon 73) was analysed for precise CRISPR/Cas9 activity. NGS data was assessed in CRISPR/Cas9-treated immortalised patient keratinocytes Despite high on-target activity, high homgeneity of DSB repair outcomes was observed at the nuclease target site. This should result in efficient reframing of the gene, with minimal divergence from the wild-type sequence.
H. contortus genome assembly used in Rezansoff et al. "The confounding effects of high genetic diversity on the determination and interpretation of differential gene expression analysis in the parasitic nematode Haemonchus contortus"
Contributors: andrew rezansoff
... The H. contortus genome assembly, gene annotation, and spliced transcripts used in Rezansoff et al.
SNP dataset and Capture-Mark-Recapture dataset used in the analysis for the paper Rick et al.: Population genomics of Bettongia lesueur: admixing increases genetic diversity with no evidence of outbreeding depression
Contributors: Kate Rick
... Translocations can be used as an effective conservation tool to combat the loss of genetic diversity often experienced by small and isolated populations. Mixing animals from multiple genetically diverged sources in one method to optimize genetic diversity in translocated populations. However, admixture as a conservation tool is rarely utilized due to the risks of outbreeding depression. Using single nucleotide polymorphisms (SNPs) and life history data (capture-mark-recapture), this data was used to investigate the genetic and fitness consequences of admixing two genetically distinct subspeices of burrowing bettong (Bettongia lesueur) as described in the paper by Rick et al.: Population genomics of Bettongia lesueur: admixing increases genetic diversity with no evidence of outbreeding depression.
Contributors: Hiroki Ando
... The data products derived and presented in the manuscript of "Venusian cloud distribution simulated by a general circulation model" to Journal of Geophysical Research - Planets. *.grd file is grads format file and *.ctl file is control file of grads data. The detail of the data is given by Sugimoto et al. (2014a and 2014b) and Takagi et al. (2018).
Contributors: Sergey Sokolov, Daria Lebedeva, Сергей Щенков, Ilya Gordeev
... The 28S rRNA genes alignment of several Trematoda families for investigation of the phylogeny of the Xiphidiata incertae sedis, including Caudotestis dobrovolski n. sp., see: Sokolov S., Lebedeva D., Shchenkov S., Gordeev I. Caudotestis dobrovolski n. sp. (Trematoda, Xiphidiata) in North Pacific scorpaeniform fish: a crisis of concept of the opecoelid subfamily Stenakrinae Yamaguti, 1970
Contributors: Alexei Kostygov, Jana Kralova, Anastasiia Grybchuk-Ieremenko
... We analyzed the collection of heteropteran hosts (907 specimens from 138 species and 23 families) captured in Papua New Guinea (PNG), a well-known biodiversity hotspot with a considerable number of endemic species of macroorganisms, for the presence of trypanosomatids, the prevalence of infection and host specificity. In addition to discovery of numerous new parasite species, some of which may represent new trypanosomatid genera, we recorded new insect hosts for the widespread trypanosomatid species and revealed potential cases of host-parasite coevolution. Attached is the alignment of sequences used in our assay of trypanosomatid diversity in PNG. In total, 185 trypanosomatid 18S rRNA sequences (147 retrieved from the GenBank and 38 representing typing units unique for PNG) were aligned using MAFFT v. 7.4. Alignment trimming was not performed in order to preserve differences between closely related species.
Data for: ‘Candidatus Bartonella dromedarii’ in the dromedary camels of Iran: Molecular investigation, phylogenetic analysis, haematological findings, and acute phase proteins quantitation
Contributors: Mehran Ghaemi, Fahime Heidari, Mohsen Ghane, Hassan Sharifiyazdi, Saeed Nazifi
... Two sequence pairs (Forward and Reverse sequencing) from RPO and ITS genes for instance were uploaded.