Contributors: Liping Zhu, Song-Ju Kim, Masahiko Hara, Masashi Aono
... Supplementary Movie of "Remarkable Problem-Solving Ability of Unicellular Amoeboid Organism and its Mechanism."
Data from: Habitat continuity and stepping-stone oceanographic distances explain population genetic connectivity of the brown alga Cystoseira amentacea
Contributors: Buonomo, Roberto, Assis, Jorge, Fernandes, Francisco, Engelen, Aschwin H., Airoldi, Laura, Serrão, Ester A.
... Effective predictive and management approaches for species occurring in a metapopulation structure require good understanding of inter-population connectivity. In this study we ask whether population genetic structure of marine species with fragmented distributions can be predicted by stepping-stone oceanographic transport and habitat continuity, using as model an ecosystem-structuring brown alga, Cystoseira amentacea var. stricta. To answer this question, we analyzed the genetic structure and estimated the connectivity of populations along discontinuous rocky habitat patches in southern Italy, using microsatellite markers at multiple scales. In addition, we modelled the effect of rocky habitat continuity and ocean circulation on gene flow by simulating Lagrangian particle dispersal based on ocean surface currents allowing multigenerational stepping-stone dynamics. Populations were highly differentiated, at scales from few meters up to 1000s of kilometers. The best possible model fit to explain the genetic results combined current direction, rocky habitat extension and distance along the coast among rocky sites. We conclude that a combination of variables suitable habitat and oceanographic transport is a useful predictor of genetic structure. This relationship provides insight into the mechanisms of dispersal and the role of life history traits. Our results highlight the importance of spatially explicit modeling of stepping stone dynamics and oceanographic directional transport coupled with habitat suitability, to better describe and predict marine population structure and differentiation. This study also suggests the appropriate spatial scales for the conservation, restoration and management of species that are increasingly affected by habitat modifications.
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Contributors: S.E. Grenfell, R.M. Callaway, M.C. Grenfell, C.M. Bertelli, A.F. Mendzil, I. Tew
... Sea-level rise associated with climate change presents a major challenge to plant diversity and ecosystem service provision in coastal wetlands. In this study, we investigate the effect of sea-level rise on benthos, vegetation, and ecosystem diversity in a tidal wetland in west Wales, the UK. Present relationships between plant communities and environmental variables were investigated through 50 plots at which vegetation (species and coverage), hydrological (surface or groundwater depth, conductivity) and soil (matrix chroma, presence or absence of mottles, organic content, particle size) data were collected. Benthic communities were sampled at intervals along a continuum from saline to freshwater. To ascertain future changes to the wetlands' hydrology, a GIS-based empirical model was developed. Using a LiDAR derived land surface, the relative effect of peat accumulation and rising sea levels were modelled over 200years to determine how frequently portions of the wetland will be inundated by mean sea level, mean high water spring and mean high water neap conditions. The model takes into account changing extents of peat accumulation as hydrological conditions alter.
Combined environmental stress from shrimp farm and dredging releases in a subtropical coastal lagoon (SE Gulf of California)
Contributors: J.G. Cardoso-Mohedano, F. Páez-Osuna, F. Amezcua-Martínez, A.C. Ruiz-Fernández, G. Ramírez-Reséndiz, J.A. Sanchez-Cabeza
... Nutrient pollution causes environmental damages on aquatic ecosystems worldwide. Eutrophication produces impacts in coastal ecosystems, affecting biota and ecosystem services. The Urias coastal lagoon (SE Gulf of California) is a sub-tropical estuary under several environmental pressures such as nutrient inputs from shrimp farm effluents and dredging related to port operations, which can release substances accumulated in sediments. We assessed the water quality impacts caused by these activities and results showed that i) nitrogen was the limiting nutrient, ii) shrimp farm effluents increased particulate organic matter and chlorophyll a in the receiving stations, and iii) dredging activities increased nitrite and reduced dissolved oxygen concentrations. The co-occurrence of the shrimp farm releases and dredging activities was likely the cause of a negative synergistic effect on water quality which mainly decreases dissolved oxygen and increases nitrite concentrations. Coastal zone management should avoid the co-occurrence of these, and likely others, stressors in coastal ecosystems.
The digital matatu project: Using cell phones to create an open source data for Nairobi's semi-formal bus system
Contributors: Sarah Williams, Adam White, Peter Waiganjo, Daniel Orwa, Jacqueline Klopp
... In many of the world's growing cities, semi-formal buses form the basis of public transit systems. However, little open and standardized data exist on these systems. The Digital Matatus project in Nairobi, Kenya set out to test whether the geo-locative capabilities of mobile technology could be used to collect data on a semi-formal transit system and whether that data could be translated into the General Transit Feed Specification (GTFS) data standard for wider use. The results of this work show that mobile technologies, particularly mobile phones, which are increasingly prevalent in developing countries, can indeed be used effectively to collect and deliver data in a modified GTFS format for semi-formal transit. Perhaps more importantly, through our work in Nairobi, we were able to identify the benefits and technical needs for developing data on semi-formal transit. Overall, the work illustrates (1) how the GTFS can be adapted to semi-formal systems and used by other cities with such transit systems, (2) that there is demand from technologists as well as transport communities for comprehensive data on semi-formal transit, (3) that releasing the data openly in the GTFS standard format can help to encourage the development of transportation applications, and (4) that including the entire transit community during the data development can create a community of users and mechanisms for institutionalizing a process of data updating and sharing. The engagement strategies our research team developed around the data collection process in Nairobi became just as important as the resulting data it produced.
Sulphur-cycling bacteria and ciliated protozoans in a Beggiatoaceae mat covering organically enriched sediments beneath a salmon farm in a southern Chilean fjord
Contributors: Carlos P. Aranda, Cristian Valenzuela, Yessica Matamala, Félix A. Godoy, Nicol Aranda
... The colourless mat covering organically enriched sediments underlying an intensive salmon farm in Estero Pichicolo, southern Chile, was surveyed by combined 454 PyroTag and conventional Sanger sequencing of 16S/18S ribosomal RNA genes for Bacteria and Eukarya. The mat was dominated by the sulphide-oxidizing bacteria (SOB) Candidatus Isobeggiatoa, Candidatus Parabeggiatoa and Arcobacter. By order of their abundances, sulphate-reducing bacteria (SRB) were represented by diverse deltaproteobacterial Desulfobacteraceae, but also within Desulfobulbaceae, Desulfuromonadaceae and Desulfovibrionaceae. The eukaryotic PyroTags were dominated by polychaetes, copepods and nematodes, however, ciliated protozoans were highly abundant in microscopy observations, and were represented by the genera Condylostoma, Loxophyllum and Peritromus. Finally, the abundant Sulfurimonas/Sulfurovum also suggest the occurrence of zero-valence sulphur oxidation, probably derived from Beggiatoaceae as a result of bacteriovorus infaunal activity or generated as free S0 by the Arcobacter bacteria. The survey suggests an intense and complex sulphur cycle within the surface of salmon-farm impacted sediments.
Contributors: Tea Mumladze, Adam M. Forte, Eric S. Cowgill, Charles C. Trexler, Nathan A. Niemi, M. Burak Yıkılmaz, Louise H. Kellogg
... The Greater Caucasus Mountains contain the highest peaks in Europe and define, for over 850km along strike, the leading edge of the second-largest active collisional orogen on Earth. However, the mechanisms by which this range is being constructed remain disputed. Using a new database of earthquake records from local networks in Georgia, Russia, and Azerbaijan, together with previously published hypocenter locations, we show that the central and eastern Greater Caucasus Mountains are underlain by a northeast-dipping zone of mantle seismicity that we interpret as a subducted slab. Beneath the central Greater Caucasus (east of 45°E), the zone of seismicity extends to a depth of at least 158km with a dip of ∼40°NE and a slab length of ∼130–280km. In contrast, beneath the western GC (west of 45°E) there is a pronounced lack of events below ∼50km, which we infer to reflect slab breakoff and detachment. We also observe a gap in intermediate-depth seismicity (45–75km) at the western end of the subducted slab beneath the central Greater Caucasus, which we interpret as an eastward-propagating tear. This tear coincides with a region of minimum horizontal convergence rates between the Lesser and Greater Caucasus, as expected in a region of active slab breakoff. Active subduction beneath the eastern Greater Caucasus presents a potentially larger seismic hazard than previously recognized and may explain historical records of large magnitude (M 8) seismicity in this region.
Contributors: Y.L. Didana, S. Thiel, G. Heinson
... Tendaho is one of the high enthalpy geothermal fields at advanced stage of exploration which is located in the Afar Depression in north eastern Ethiopia. Six deep and shallow geothermal wells were drilled in the field between 1993 and 1998. Here we present the first 3D conductivity model of the Tendaho high enthalpy geothermal field obtained from 3D inversion of magnetotelluric (MT) data. MT data from 116 sites at 24 selected periods in the period range from 0.003s to 1000s were used for the 3D inversion. The 3D conductivity model reveals three main resistivity structures to a depth of 20km. The surface conductive structure (≤10Ωm and >1km thick) is interpreted as sediments, geothermal fluids or hydrothermally altered clay cap. The underlying high resistivity structure in the Afar Stratiod basalts is associated with the deep geothermal reservoir. At a depth >5km, a high conductivity is observed across the whole of the Tendaho geothermal field. This structure is inferred to be the partial melt (heat source) of the geothermal system. The most striking feature in the 3D model is a fracture zone (upflow zone) in the Afar Stratoid basalts at the Dubti area, which acts as a pathway for geothermal fluids. Targeting the inferred fracture zone by directional drilling will likely increase the permeability and temperature of the deep reservoir in the basalts. Hence, the inferred presence of a fracture zone and shallow magma reservoir suggest that there is a huge potential (with temperature exceeding 270°C at 2km depth) at Tendaho for conventional hydrothermal geothermal energy development.
Estimation of nutrient input by a migratory bird, the Tundra Swan (Cygnus columbianus), to winter-flooded paddy fields
Contributors: Hiroaki Somura, Tsugiyuki Masunaga, Yasushi Mori, Ikuo Takeda, Jun’ichiro Ide, Hirokazu Sato
... Thousands of Tundra Swans visit winter-flooded paddy fields in the study area, Yasugi city, Shimane Prefecture, Japan every year for overwintering from November to March. Since 2004, they have roosted in the paddy fields during the night and foraged in the paddy and surrounding fields during the day, coinciding with the time when farmers began using winter-flooded paddy fields. Before 2004, the swans visited the area for foraging during the day and roosted at nearby lakes, wetlands, and sandbars along rivers during the night. When the swans visited our target paddy fields, the water gradually became green and began to emit an ammonia-like odor. In this study, we investigated the changes in the water qualities of winter-flooded paddy fields and the influence of bird excrement on water quality in the paddy fields during winter, and then estimated the amounts of nitrogen (N) and phosphorus (P) provided by bird droppings to the paddy fields. The mean concentrations of N, P, suspended sediment, and total organic carbon were higher in the overwintering season than during the irrigation season. This trend was observed in both the first and second seasons of the study. The spatial distribution of electric conductivity (EC) measured using a GEM-2 broad-band electromagnetic sensor coincided with that of the matted sites of Tundra Swans in the paddy field, which indicated that the excrement of the swans affected the EC distribution. The total input amounts of N and P from the birds’ excrement to the flooded paddy fields were estimated using a simple model that considered bird counts and probable nutrient content of feces, and the amounts were found to be equivalent to approximately 30% of those present in the standard fertilizers used for rice during the irrigation period. These results suggested that the excrement from the swans markedly influences the water qualities of winter-flooded paddy fields.
Effects of irregular basement structure on the geometry and emplacement of frontal thrusts and duplexes in the Quebec Appalachians: Interpretations from well and seismic reflection data
Contributors: E. Konstantinovskaya, M. Malo, F. Badina
... Irregular basement geometry may affect thrust propagation in foreland fold–thrust belts creating a perturbation in structural continuity of hydrocarbon fields. Here we investigate how the irregular pattern of normal faults, along with the presence of uplifts and transverse faults in the Grenvillian basement has influenced the geometry and emplacement of frontal thrusts and duplexes in the parautochthonous domain of the southern Quebec Appalachians during the middle–late Ordovician Taconian orogeny. Integration of data from surface geology, wells, and 2D and 3D seismic reflection surveys into a regional-scale structural model is used to reconstruct the 3D geometry and emplacement history of one- and two-horse duplexes in the Joly–Saint-Flavien gas storage area. The normal hinterland to foreland sequence of thrusting in this area is complicated by the differential emplacement of tectonic slices along strike of the orogenic front, starting in the SW and developing subsequently to the NE within each structural level. The shortening related to duplex emplacement decreases laterally over the distance of 20km from −49% in the SW (Joly area) to −31% in the NE (Saint-Flavien area). Duplex emplacement resulted from the differential forward propagation, deflexion and vertical-axis rotation of the roof thrust (Logan's Line), which, in turn, has been induced by the presence of frontal uplift and transverse faults in the basement. The structural–lithological analysis of tectonic slices and restoration of their initial location allows us to consider the lower slice of the Joly duplex as a structural trap comparable to the fractured reservoir in lower Ordovician dolomites of the Saint-Flavien duplex.