Contributors: Mei-hui Liu
... This set of supplementary data is related to the article “Blended Cross-tier Teacher Development: Designing Online Video-based Pragmatic Assessment.” It contains 1) survey data, 2) data collection methods, and 3) samples of edited video clips retrieved from Youtube links and deigned discourse completion tests. The participants’ interview content and reflection entries cannot be exposed to the public under the ethics guidelines of National Cheng Kung University Human Research Ethics Committee in Taiwan.
Raw data supporting “Data set of the antioxidant properties of ascorbyl 2,6-dipalmitate stabilised nanoemulsions and their facilitated mucodiffusion due to the intestinal-protein corona”
Contributors: María Plaza Oliver, Manuel Santander, Victoria Lozano Lopez, L. Castro-Vázquez, Virginia Rodriguez Robledo, Joaquin Gonzalez-Fuentes, Pilar Marcos, Mariamar Arroyo Jimenez
... Colloidal carriers have greatly contributed to overcome biopharmaceutical limitations of drugs with low oral bioavailability, a fact that is related to their physicochemical properties and composition that determine their biological behaviour. In this sense, we have developed α-tocopherol nanoemulsions stabilised by ascorbyl 2,6-dipalmitate (ADP), a hydrophobic derivative of the ascorbic acid, obtaining the formulations NEE1-ADP, NEE2-ADP and NEE3-ADP. In this repository we collect data supporting the document “Data set of the antioxidant properties of ascorbyl 2,6-dipalmitate stabilised nanoemulsions and their facilitated mucodiffusion due to the intestinal-protein corona”, submitted to Data in brief (November 2019). That data set includes results of the antioxidant properties of NEE-ADP formulations, their stability under saline conditions and the mucodiffusion of uncoated and intestinal-protein coated NEE-ADP nanosystems. The raw data of those experiments are included in this repository record. i) Raw data related to ABTS and DPPH assays (please see folder “raw data ABTS and DPPH assays”). Concretely, we have collected the absorbance values measured at 734 nm (ABTS assay) or at 515 nm (DPPH assay). This was the basis of results further detailed in the mentioned dataset (figures 2 and 3). ii) Raw data related to the ccc determination, showing results of the hydrodynamic mean size measurements carried out at increasing concentrations of CaCl2. These data, which can be found in the folder “raw data ccc determination”, were further analysed to obtain figure 4 included in the mentioned data set. iii) Raw data from particle tracking experiments (figure 5 in the related data set). In these studies, raw data consists on time-lapse videos. Samples analysis required 20 videos but we include a selection of 2 videos per sample due to the high size of the files. Please see folder “raw data Particle Tracking experiments” for further details. These videos show the interaction of NEE1-ADP and NEE3-ADP with intestinal porcine mucus, used as model of the human intestinal mucus (sub-folders “Videos NEE1-ADP (nanoemulsion)” and “Videos NEE3-ADP (nanoemulsion)”. Furthermore, we evaluated the effect of the intestinal protein corona in this process (sub-folders “Videos NEE1-ADP (protein-coated)” and “Videos NEE3-ADP (protein-coated)”).
Contributors: kun jia, Liqiang Li
... Predicted particle trajectories, the color represents the normalized velocity of 15μm particles.
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Contributors: Trygve Reenskaug
... Ellen programs her smart alarm clock by composition. She is used to composing Lego projects by selecting bricks and clicking them together. In a similar fashion, she selects objects and links them together to form her personal program. While Lego bricks are dumb pieces of plastic, Ellen's objects are smart and she augments them with code that adapt them to her needs.
Contributors: Miguel Angel Gonzales Calle
... This dataset contains information related to the experimental miniature reproduction of a raking test of a ship bottom structure in 1:30 reduced scale using a thin walled 316L steel model made by additive manufacturing (powder bed fusion process). The dataset contains: STL geometry files of miniature structure and tensile test samples, force-displacement data of raking test from large-scale ship bottom structure test and miniature model test, some test images and video extracted from miniature test.
Contributors: Solam Lee
... AloNet Author: Solam Lee (email@example.com) AloNet is a convolutional neural network based on U-Net that can identify the hair loss and the scalp area by analying clinical photograph. This model was developed for the automated calculation of the Severity of Alopecia Tools (SALT) score in assessment of patients with alopecia areata. This repository posts the Mendeley Supplementary Materials, the program code, and the relevant data used in the paper titled "Clinically Applicable Deep Learning Framework for Measurement of the Severity of Alopecia Tool Score in Patients with Alopecia Areata". Along with the programs in the "/Program/" directory, a total of 2716 pixelwise annotations used for train the hair loss identifier (mask) and the hair loss identifier (target) could be find in the "/Data/" directory. However, please note that the clinical photograph of the patients could not be made publicly available because of strict privacy regulation. Before using AloNet program with your dataset, you should convert your dataset into numpy files. One clinical photograph (saved in .jpg with RGB format) need each annotation for the scalp area (saved in .gif with black&white color) and the hair loss (saved in .gif with black&white color), respectively. Please make sure that they have same image size each other, or the conversion will fail. We are now currently working on several postprocessing algorithms for AloNet to be available for general use. The Flask web application and its code will be made available publicly when the program is ready to use.
Data/Software for "Presynaptic Mitochondria Volume and Abundance Increase During Development of a High-Fidelity Synapse"
Contributors: Connon I. Thomas, Christian Keine, Satoko Okayama, Rachel Satterfield, Morgan Musgrove, Debbie Guerrero-Given, Naomi Kamasawa, Samuel M. Young, Jr.
... Contains data and software from the publication: "Presynaptic Mitochondria Volume and Abundance Increase During Development of a High-Fidelity Synapse" published in the The Journal of Neuroscience (https://doi.org/10.1523/JNEUROSCI.0363-19.2019). The preprint to this data set has been published on bioRxiv (https://doi.org/10.1101/689653). In this study, we created a helper-dependent adenoviral vector (HdAd) to co-express cytoplasmic EGFP and a genetically encoded peroxidase marker (mito-APEX2) at the calyx of Held, an excellent model for deciphering regulatory mechanisms of presynaptic function. ABSTRACT: The calyx of Held, a large glutamatergic presynaptic terminal in the auditory brainstem undergoes developmental changes to support the high action-potential firing rates required for auditory information encoding. In addition, calyx terminals are morphologically diverse which impacts vesicle release properties and synaptic plasticity. Mitochondria influence synaptic plasticity through calcium buffering and are crucial for providing the energy required for synaptic transmission. Therefore, it has been postulated that mitochondrial levels increase during development and contribute to the morphological-functional diversity in the mature calyx. However, the developmental profile of mitochondrial volumes and subsynaptic distribution at the calyx of Held remains unclear. To provide insight on this, we developed a helper-dependent adenoviral vector (HdAd) that expresses the genetically encoded peroxidase marker for mitochondria, mito-APEX2, at the mouse calyx of Held. We developed protocols to detect labeled mitochondria for use with serial block face scanning electron microscopy to carry out semi-automated segmentation of mitochondria, high-throughput whole terminal reconstruction and presynaptic ultrastructure in mice of either sex. Subsequently, we measured mitochondrial volumes and subsynaptic distributions at the immature postnatal day 7 (P7) and the mature (P21) calyx. We found an increase of mitochondria volumes in terminals and axons from P7 to P21 but did not observe differences between stalk and swelling subcompartments in the mature calyx. Based on these findings, we propose that mitochondrial volumes and synaptic localization developmentally increase to support high firing rates required in the initial stages of auditory information processing. Data are sorted by the figures they appear in. Media (movies and 3D models) and custom-written software are located in separate folders.
Structural Composite Supercapacitor using Carbon Nanotube Mat Electrodes with Interspersed Metallic Iron Nanoparticles: Additional Data
Contributors: Benjamin Mapleback, Tristan Simons, Youssof Shekibi, Kamran Ghorbani, Andrew Rider
... This additional data for the article, “Structural Composite Supercapacitor using Carbon Nanotube Mat Electrodes with Interspersed Metallic Iron Nanoparticles”  presents supplementary methods, microscopy, spectroscopy, electrochemical and structural data for the use of a carbon nanotube (CNT) mat interspersed with metallic iron nanoparticles as a structural supercapacitor electrode material that could be incorporated into fiber-reinforced composites. Advanced transmission electron microscopy and is presented as a full tilt series and then processed using electron tomography and presented as selected slices and models. Composite structural supercapacitor manufacturing method is detailed, and initial results presented.
Contributors: Elizabeth Packnett
... Video abstract (Packnett et al. 2019 Vaccine, DOI: 10.1016/j.vaccine.2019.06.065)
Data for: Weighting and Reweighting of Visual Input via Head Mounted Display given Unilateral Peripheral Vestibular Dysfunction
Contributors: Anat Lubetzky, Ken Perlin, Jennifer Kelly, Bryan Hujsak, Daphna Harel
... Dataset including all values (gain, phase, PSD) and videos of the scenes