Advancing quantitative understanding of self-potential signatures in the critical zone through long-term monitoring
Contributors: Kaiyan Hu, Damien Jougnot, Qinghua Huang, Majken C. Looms, Niklas Linde
... The HOBE hydrological observatory is located within an agricultural field (Fig. 2) in the Skjern river catchment (Fig. 2a), near Voulund, western Denmark. By making the SP and complimentary (temperature, dielectric constant, evapotranspiration, precipitation) data time-series available, we hope to stimulate other researchers to test new SP modeling approaches and interpretation strategies against these data. Each folder contains a data file, a file of sensors depths and a corresponding description file. A manuscript with the same name as this data set has been submitted to Journal of Hydrology in November 2019.
Contributors: Nikola Tošić, Adam Knaack, Yahya Kurama
... This dataset contains supporting documentation explaining the use of time-dependent concrete material models TDConcrete, TDConcreteEXP, TDConcreteMC, and TDConcreteMC10NL in OpenSees. The dataset contains a manual explaining the use and features of the models, an Excel table for calculating model input parameters and example files using the material model TDConcreteMC10NL on a specific example.
Contributors: Matthias Sinnesael, Sietske J. Batenburg, Christian Zeeden, Jiri Laurin, Damien Pas, Linda Hinnov, Johannes Monkenbusch, Maximilian Vahlenkamp, Mingsong Li, Sébastien Wouters
... Supplementary materials for Submission: Sinnesael et al., Earth-Science Reviews "The Cyclostratigraphy Intercomparison Project (CIP): consistency, merits and pitfalls ".
Contributors: Guillermo Toriz, Carmen Miramontes-Corona, Alfredo Escalante, Ezequiel Delgado, Corona Gonzalez Rosa Isela, Humberto Vázquez-Torres
... Processed Data
Contributors: Zhanni Luo
... This is an eye-tracking experiment to investigate whether visualizers and verbalizers present different eye-movement patterns in viewing documents with different arrangements of images and text. Combined with the questionnaire and interview approach, the current study explored the accuracy of using eye-tracking technology to identify visualizers and verbalizers, as well as possible factors contributing to different levels of accuracy.
A Mathematical Model for the Berth Allocation Problem with Variable Service Time and Continuous Time Horizon
Contributors: Bruno Luís Hönigmann Cereser
... Tests, Results and Codes of the paper "A Mathematical Model for the Berth Allocation Problem with Variable Service Time and Continuous Time Horizon".
Data/Software for "Presynaptic Mitochondria Volume and Abundance Increase During Development of a High-Fidelity Synapse"
Contributors: Connon I. Thomas, Christian Keine, Satoko Okayama, Rachel Satterfield, Morgan Musgrove, Debbie Guerrero-Given, Naomi Kamasawa, Samuel M. Young, Jr.
... Contains data and software from the publication: "Presynaptic Mitochondria Volume and Abundance Increase During Development of a High-Fidelity Synapse" published in the The Journal of Neuroscience (https://doi.org/10.1523/JNEUROSCI.0363-19.2019). The preprint to this data set has been published on bioRxiv (https://doi.org/10.1101/689653). In this study, we created a helper-dependent adenoviral vector (HdAd) to co-express cytoplasmic EGFP and a genetically encoded peroxidase marker (mito-APEX2) at the calyx of Held, an excellent model for deciphering regulatory mechanisms of presynaptic function. ABSTRACT: The calyx of Held, a large glutamatergic presynaptic terminal in the auditory brainstem undergoes developmental changes to support the high action-potential firing rates required for auditory information encoding. In addition, calyx terminals are morphologically diverse which impacts vesicle release properties and synaptic plasticity. Mitochondria influence synaptic plasticity through calcium buffering and are crucial for providing the energy required for synaptic transmission. Therefore, it has been postulated that mitochondrial levels increase during development and contribute to the morphological-functional diversity in the mature calyx. However, the developmental profile of mitochondrial volumes and subsynaptic distribution at the calyx of Held remains unclear. To provide insight on this, we developed a helper-dependent adenoviral vector (HdAd) that expresses the genetically encoded peroxidase marker for mitochondria, mito-APEX2, at the mouse calyx of Held. We developed protocols to detect labeled mitochondria for use with serial block face scanning electron microscopy to carry out semi-automated segmentation of mitochondria, high-throughput whole terminal reconstruction and presynaptic ultrastructure in mice of either sex. Subsequently, we measured mitochondrial volumes and subsynaptic distributions at the immature postnatal day 7 (P7) and the mature (P21) calyx. We found an increase of mitochondria volumes in terminals and axons from P7 to P21 but did not observe differences between stalk and swelling subcompartments in the mature calyx. Based on these findings, we propose that mitochondrial volumes and synaptic localization developmentally increase to support high firing rates required in the initial stages of auditory information processing. Data are sorted by the figures they appear in. Media (movies and 3D models) and custom-written software are located in separate folders.
Online Supplementary Material for: Clements JC, Comeau LA. Behavioural defenses of shellfish prey under ocean acidification. Journal of Shellfish Research
Contributors: Jeff Clements
... Annotated R-script, all raw data files, and a complete dataset accompanying the following article: Clements JC, Comeau LA. 2018. Behavioural defenses of shellfish prey under ocean acidification. Journal of Shellfish Research. (Under Review). All results and methods can be obtained from the manuscript itself.
Contributors: Eniko Magyari
... This dataset contains the results of multi proxy analyses done on the 20 to 9 kyr cal BP section of a lake sediment core taken from Kokad Mire, E Hungary (47°24’10” N, 21°55’43” E; 112 m a.s.l.). Sediment description, pollen, microcharcoal and major element analyis results are included in the dataset. In addition, input files for quantitative climate reconstruction and output files for biomisation and summer (June-July-August) mean temperature reconstruction are provided with relevant R scripts. The aim of the study was to reconstruct vegetation change, soil development and provide quantitative climate reconstruction for the last glacial termination period for E Hungary and study the early expansion of temperate broadleaved trees (mainly Ulmus and Corylus) in the lowland of E Hungary. Our results suggest that warming was most intensive after Heinrich event 1, around 16,200 cal yr BP, the late glacial climate fluctuation is weakly expressed, the Younger Dryas (GS-1) do not show significant decrease in summer mean temperatures, and hazel shrubs (Corylus) expand in the area at that time confirming that this contintal area was wekly affected by this climate perturbation. The study was published in Quaternary Science Reviews. The paper is available at https://www.sciencedirect.com/science/article/pii/S0277379119305657?dgcid=author or https://doi.org/10.1016/j.quascirev.2019.105980
Contributors: Mariam CAMARERO
... Companion dataset and output files to the paper Club Convergence of Sectoral CO2 Emissions in the European Union. We apply Phillips and Sul (2007, 2009) methodology to test for convergence and club convergence to emissions of EU countries at a sectoral level.