2219 results
Contributors: Eric Cassmann, Bianca Zaffarano, Joseph Haynes, Ganwu Li, qi chen
Date: 2019-02-10
... This is a 4823 nucleotide segment which corresponds to the cleanest read following bioinformatics analysis. This segment contains the complete hexon gene as well as complete pVI, pVII, pX genes and partial sequences of the penton and protease genes of an avian siadenovirus. The sequence was derived from a pooled liver and kidney homogenate from a cockatiel with chronic liver disease.
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Contributors: Eric Cassmann, Bianca Zaffarano, Joseph Haynes, Ganwu Li, qi chen
Date: 2019-02-10
... Partial coding sequence of DNA-polymerase gene of PsAdV-5 isolated from a cockatiel (Nymphicus hollandicus).
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Contributors: Ivan Fiala
Date: 2019-01-25
... Supplementary Table S1 contains details about all sequences used in the study Liu et al. 2019. Phylogeny of Myxobolidae (Myxozoa) and the evolution of myxospore appendages in the Myxobolus clade, submitted to International Journal for Parasitology. SSUrDNAalignment
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Contributors: Jorge Hernández-García
Date: 2019-01-24
... Data including tables (xlsx format), raw sequences (fasta format), raw and trimmed alignments (fasta format), and final phylogenetic trees.
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Contributors: Barbara Mair, Jelena Tomic, Sanna Masud, Jason Moffat
Date: 2019-01-24
... Human pluripotent stem cells (hPSCs) provide an invaluable tool for modeling diseases and hold promise for regenerative medicine. For understanding pluripotency and lineage differentiation mechanisms, a critical first step involves systematically cataloging genes that are indispensable for hPSC maintenance and proliferation. To map genetic determinants of hPSC fitness, we performed genome-scale loss-of-function screens in an inducible Cas9 H1 hPSC line cultured on feeder cells and feeder-free to identify essential genes. Among these, we found FOXH1 and VENTX, genes that encode transcription factors previously implicated in stem cell biology, as well as an uncharacterized gene, C22orf43/DRICH1. hPSCs essential genes are substantially different from other cell lines, and gene essentiality in hPSCs is highly context-dependent with respect to different growth substrates. Our CRISPR screens establish parameters for genome-wide screens in hPSCs, which will facilitate the characterization of unappreciated regulators of hPSC biology to understand the genetic wiring of hPSC fitness and pluripotency.
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Contributors: Srinivasa Chaluvadi, Subhash N, Porter Young, Bhavesh Gajera, Bochra Amina Barhi, Kentrez Thompson, Jeff Bennetzen, Robert Krueger
Date: 2019-01-09
... These supplementary data include Supplementary tables and plastome assemblies related to the manuscript "Phoenix phylogeny, genetic diversity, distribution and population structure characterized in a world collection of date palm (Phoenix dactylifera) and its wild relatives"
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Contributors: Stefania Gaspari, Letizia Marsili, Chiara Natali, Sabina Airoldi, Caterina Lanfredi, Charles Deeming, Andre Moura
Date: 2019-01-08
... This entry contains the genetic data used in the publication: Gaspari S, Marsili L, Natali C, Airoldi S, Lanfredi C, Deeming C, Moura AE. Spatio-temporal patterns of genetic diversity in the Mediterranean striped dolphin (Stenella coeruleoalba). J Zool Syst Evol Res. 2019;00:1–14. https://doi.org/10.1111/jzs.12265
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Contributors: James Weger
Date: 2019-01-05
... Outputs from Multiqc and BBmap for data analysis.
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Contributors: Jun Cao, Qian Ren, Kaimin Hui
Date: 2018-12-31
... RNA sequencing of the intestine immune of Marsupenaeus japonicus under WSSV challenge.
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Contributors: M. Florencia Martini
Date: 2018-12-24
... Files of DMPC-melittin and DMPC-pentalysin interaction, and different types of data analysis
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