2026-10-15T09:11:54Z https://data.mendeley.com/oai

oai:data.mendeley.com/7t36p2dvjp.2 2024-10-10T08:21:42Z

Domínguez Pérez, Dany Original paired-end transcriptome outputs from the RNAseq analyses of the false black coral Savalia savaglia Mendeley Data This dataset contains outputs generated from the original paired-end transcriptomic analyses of the false black coral Savalia savaglia. The dataset includes the following files: • 75282_ID2093_3-SAS_S416_L004_R1_001.fastq.P.qtrim.zip: Preprocessed forward reads used for the novo assembly, obtained from the paired-end RNA-Seq data of Savalia savaglia, containing high-quality sequences that passed quality trimming and filtering using Trimmomatic. • 75282_ID2093_3-SAS_S416_L004_R2_001.fastq.P.qtrim.zip: Preprocessed reverse reads used for the novo assembly, obtained from the paired-end RNA-Seq data of Savalia savaglia, containing high-quality sequences that passed quality trimming and filtering using Trimmomatic. • Assembly_Ss_PE.Trinity.fasta: Original, non-filtered de novo paired-end transcriptome assembly of Savalia savaglia, generated from 68 million PE reads using the Trinity Assembler. • Assembly_Ss_PE_Trinity.fasta_stats.txt: Statistical summary of the paired-end transcriptome assembly of Savalia savaglia. • Assembly_Ss_PE_Trinity.fasta.gene_trans_map: Transcript-to-gene mapping file generated during the paired-end transcriptome assembly of Savalia savaglia. • quant_Ss_PE.sf: Salmon output containing expression values for the assembled transcripts from the paired-end assembly of Savalia savaglia. Additionally, the dataset includes the following files from DIAMOND BLASTx analyses, which used the original de novo paired-end transcriptome assembly of the false black coral Savalia savaglia: • UniRef90_PE.diamond.blastx.outfmt6: BLASTx output file against the UniRef90 database, reporting the top alignment for each query (assembled transcripts) from the paired-end assembly of Savalia savaglia. • UniRef90_PE.diamond.blastx.outfmt6.grouped: Grouped BLASTx hits from the paired-end assembly of Savalia savaglia, designed to improve sequence coverage by combining multiple high-scoring segment pairs (HSPs). • UniRef90_PE.diamond.blastx.outfmt6.hist: Histogram summarizing the distribution of BLASTx hit lengths obtained from the paired-end assembly of Savalia savaglia. • UniRef90_PE.diamond.blastx.outfmt6.w_pct_hit_length: File providing percentages of hit lengths from BLASTx analyses of the paired-end assembly of Savalia savaglia, including the top hit's length and the percent of the length covered in the alignment. Transcriptomics Leone, Serena Canese, Simonepietro Terlizzi, Francesco Modica, Maria Vittoria Dataset doi:10.17632/7t36p2dvjp.2 oai:data.mendeley.com/7t36p2dvjp.2 Creative Commons Attribution 4.0 International http://creativecommons.org/licenses/by/4.0 https://data.mendeley.com/datasets/7t36p2dvjp 2024-10-10T08:21:42Z