The oscillation amplitude of impingement plane at z=−L in Reactor II at various (a) excitation amplitudes and (b) excitation frequencies.
... The relationship between frequency and Reynolds number in Reactor II. () self-sustained flapping oscillationfrequencies with excitation, and () the excitation frequencies corresponding to excited deflecting oscillation.
... Summary of oscillation behaviors in T-jets reactors with and without excitation.
... Oscillation amplitude of impingement plane at z=−L in Reactor I at various (a) excitation amplitudes and (b) excitation frequencies.
... Oscillation behavior... Flapping oscillationfrequencies of the impingement plane at z=−L in Reactor I.
Contributors:Maeike Zijlmans, Julia Jacobs, Rina Zelmann, François Dubeau, Jean Gotman
The relation between seizure frequency per month and number of channels with (A) ripples (>1/min), (B) fast ripples (>1/min), and (C) more than 20 fast ripples per minute. There were no patients with 0 channels with ripples (>1/min; A), but there were patients with 0 channels with fast ripples (>1 or >20/min; B and C). The seizure frequency was shown on a logarithmic scale, because of the distribution. As indicated in the text, there was no correlation between seizure frequency per month and the number of channels with more than 1 ripple or fast ripple per minute, but there was a positive correlation between seizure frequency and more than 20 fast ripples per minute.
... This table shows the correlation coefficients Rho for different alternative comparisons: seizure frequency (seizures/month) compared to the number and percentage of channels with ripples, fast ripples, spikes and ripples and fast ripples without spikes (first two lines), seizure frequency compared to number of channels with higher rates of ripples and fast ripples (>5, >10 and >20, lines 3–5) and number of seizure-days/month compared to channels with ripples and fast ripples. All comparisons were done for all patients, all patients with temporal lobe epilepsy and all patients with unilateral mesiotemporal seizure onset.
Contributors:Maeike Zijlmans, Julia Jacobs, Yusuf U. Kahn, Rina Zelmann, François Dubeau, Jean Gotman
Channels with potential muscle artefacts were excluded from the analysis. This was done by reviewing the SEEG at normal time scale with a filter of 80Hz together with the available epidural, ECG and EMG channels. Muscle artifact can be recognized as a simultaneous high frequency artifact over channels that are potentially outside of the brain, like channels LS6-7 and above, LC5-6 and above and RS5-6 and above in this example. Another clue could be obtained by filtering at lower frequencies as well. If still in doubt, the signal was reviewed at a timescale showing all samples. Muscle artifact shows a less sinusoid shape than HFOs and the frequency spectrum shows relatively more frequencies (Otsubo et al., 2008). Whenever there was doubt, the channel was excluded.
... High frequencyoscillations
Contributors:Seine A. Shintani, Kotaro Oyama, Norio Fukuda, Shin’ichi Ishiwata
HSOs in cardiomyocytes with blockade of the SR functions. (A) Top, left: epi-illumination image of a myocyte expressed with AcGFP in Z-disks. Fluo-8 was loaded into the myocyte, and 200μM ryanodine and 4μM thapsigargin were present. Laser center is indicated (closed red circle). The yellow arrow indicates the sarcomere used for the analysis. Top, right: time-dependent changes in temperature induced by IR laser irradiation for 10s (2nd irradiation; see Fig. S1B for data of 1st, 2nd and 3rd irradiations). Given the distance from the laser center, the temperature in the sarcomeres indicated by the yellow arrow in Top, left was estimated to be 40.8°C. Bottom, left: enlarged view of the graph (2–6s) showing the occurrence of HSOs. Note that HSOs were induced in a delayed fashion (∼1.5s after the onset of heating). Bottom, right: enlarged view of the graph showing HSOs at the steady-state. Note no periodic F.I. (i.e., [Ca2+]i) changes in any of the graphs, due to the presence of ryanodine and thapsigargin. (B) Effect of heating on peak SLs during HSOs. IR laser irradiation (for 10s each) was applied three times consecutively. Minimal and maximal SLs, obtained at the peak of shortening and lengthening, respectively. (C) Effect of heating on the amplitude of HSOs. Amplitude was defined as maximal SL (at the peak of lengthening) minus minimal SL (at the peak of shortening) [cf. (B)]. (D) Effect of heating on the frequency of HSOs. (E) Effect of heating on the sarcomere shortening velocity during HSOs. Velocity was calculated based on our previous study employing SL nanometry . In (B), (C), (D) and (E), data obtained 1.5, 5 and 8.5s after the onset of heating (i.e., beginning, middle and end of heating) were analyzed for 2nd and 3rd heating. Due to time delay of the appearance of HSOs [see (A) and Fig. S1B], data obtained 4, 6.5 and 9s after the onset of heating (i.e., beginning, middle and end of heating) were analyzed for 1st heating. ∗P<0.05 compared with the corresponding value obtained in the beginning of heating. #P<0.05 compared with the corresponding value obtained in the middle of heating. †P<0.05 compared with the corresponding value during the 1st heating. ‡P<0.05 compared with the corresponding value during the 2nd heating.
... Temperature dependence of the occurrence of HSOs. (A) Top: relationship between the distance from the laser center and ΔT in spontaneously beating myocytes, showing whether or not HSOs were induced by heat pulses. Myocytes were set on the microscopic system at the initial temperature of 25°C, and the heat pulse was given for 10s. The values of ΔT that induced HSOs are shown in orange, and those at which HSOs were not observed are shown in gray. The lowest and highest end of the temperature range for HSOs are shown in blue and red triangles, respectively. Bottom: temperature dependence of the state of sarcomeres in neonatal myocytes, i.e., spontaneous beating without HSOs (green) or spontaneous beating with HSOs (yellow), or contraction [with no oscillations (red)]. Cell numbers are indicated on left. Of the total 16 myocytes tested, four myocytes (#13–16) did not exhibit HSOs (one even at 41.5°C). Note that the lowest temperatures at which HSOs occur in various myocytes are likely lower than those shown in this graph (Table 2). (B) Top: same as in (A) top in non-beating myocytes, showing whether or not HSOs were induced by heat pulses. As in (A), myocytes were set on the microscopic system at the initial temperature of 25°C, and the heat pulse was given for 10s. The values of ΔT that induced HSOs are shown in orange, and those at which HSOs were not observed are shown in gray. The lowest and highest end of the temperature range for HSOs are shown in blue and red triangles, respectively. Bottom: temperature dependence of the state of sarcomeres in neonatal myocytes, either relaxation (green), HSOs (yellow) or contraction [with no oscillations (red)]. Cell numbers are indicated on left. Of the total 8 myocytes tested, one myocyte (#5) did not exhibit relaxation, presumably because the lowest temperature at which observation started was relatively high (i.e., 40.6°C).
... Summary of maximal and minimal temperatures for HSOs in beating and non-beating myocytes. Tmax (Tmin), maximal (minimal) temperature at which HSOs were observed in the experiments of Fig. 3. Note that the real Tmin value may be even lower than the value (∼38.6°C) in this table and hence closer to the body temperature of rat neonates  in beating myocytes, because in all myocytes showing HSOs, the oscillations were already induced at the lowest temperatures (37–40°C; see Fig. 3A) given. ΔT, Tmax minus Tmin. n, 12 and 8 for beating and non-beating myocytes, respectively.
... HSOs in spontaneously beating cardiomyocytes. (A) Epi-illumination image of a myocyte expressed with AcGFP in Z-disks. Fluo-8 loaded into the myocyte. Laser center is indicated (closed red circle). A yellow arrow indicates the sarcomere for the analysis in (C). (B) Top: changes in temperature induced by IR laser irradiation for 10s. Bottom: relationship of the distance from laser center and ΔT. Given the distance from the laser center, the temperature in the sarcomeres, indicated by the yellow arrow in (A), was estimated to be 39.7°C. (C) Left, top: time-dependent changes in SL and F.I. in the myocyte in (A) upon IR laser irradiation (2nd irradiation; see Fig. S1A for data of 1st and 2nd irradiations). F.I. was obtained from the whole myocyte in the view window. Heat pulse was given for 10s, i.e., from 3 to 13s (in gray). Due to the temperature sensitivity of fluorescence , F.I. was decreased (or increased) as heat pulse was given (or ceased). Left, bottom: enlarged view of the graph showing SL on top from 6 to 10s. HSOs are clearly seen coexisting with [Ca2+]i-dependent spontaneous beating. Right, top: FFT analysis for the changes in F.I. from 4.7 to 12.5s. Right, bottom: same as in Right, top for the changes in SL. Note that while only one peak is present for F.I., two different components, i.e., slow and fast components, are seen for SL (with the former corresponding to that for F.I.; see arrows). (D) Left: effects of IR laser irradiations on the frequency of Ca2+ transient. Closed red circles with error bars, average values; open circles in various colors without error bars, individual data. ∗Pfrequency of HSOs. Closed black circles with error bars, average values; open circles in various colors without error bars, individual data. The HSO frequency was not significantly changed during the course of heating (both 1st and 2nd heating). Data obtained 1.5, 5 and 8.5s after the onset of heating were analyzed. n=24 (12 cells).
... Summary of the effects of heating on the cross-bridge attachment rate and the properties of HSOs. Our mathematical model predicts that heating increases amplitude and decreases frequency via an increase in the attachment rate constant of cross-bridges, α. Arrows, directions of change. See [19,20] for details of our model.
Contributors:Miguel Antonio Aon, Sonia Cortassa, Brian O’Rourke
Loss of correlation exhibited by mitochondrial oscillators in the high-frequency, low-amplitude domain of the power spectrum after treatment affecting ROS production, scavenging, or spreading. Isolated cardiomyocytes loaded with TMRM as described for the other experiments were treated for 30min with 64μM 4′Cl-DZP (n=4, two experiments) or 15μM rotenone (n=4, two experiments) or for 2h with 135μM TMPyP (n=4, two experiments). Treated cells were imaged at 110-ms time resolution and the TMRM fluorescence time series analyzed by PSA. (A) We determined the Pearson correlation coefficient, r, of the high-frequency, low-amplitude region of the spectrum as that represented by frequencies >0.3Hz. Represented are the absolute values of r. We determined 0.3Hz as delimiting the high-frequency region on the basis of analysis of white noise spectra since it contains 93% of the data points (panel E; the dashed line points out the 0.3Hz frequency, which to the right corresponds to the high-frequency, low-amplitude domain of the spectrum, as in panels B–E). This analysis was also applied to randomized time series (see Fig. 4 B) or mitochondria oscillating outside the mitochondrial cluster (panel D). The region of the spectrum >0.3Hz corresponds to random behavior characterized by r=0.051±0.001 (n=4) as opposed to r=0.70±0.05 (n=4) exhibited by the mitochondrial network under control conditions (panel B) or an oscillating mitochondrial cluster (panel C). In panels B–E, the dashed lines represent the linear fitting for the two separate regions of the spectrum to emphasize that the change in slope mainly happens in the high frequency domain (see also Fig. 5). In panel A, WN is white noise and MOC stands for mitochondria outside the cluster.
... Physiological and pathophysiological behaviors of the mitochondrial network in heart cells. Freshly isolated ventricular cardiomyocytes were loaded with 100nM TMRM and imaged by two photon microscopy (150-ms time resolution) as described in Materials and Methods. The results obtained from a stack of 3720 images are shown (see the video of this experiment in Supplementary Material). Before the mitochondrial network reaches criticality (9,15,30), the ΔΨm (as measured by TMRM) oscillates at high frequencies and small amplitudes. After criticality, the network behavior evolves into “pathophysiological” behavior characterized by low-frequency, high-amplitude oscillations (8,10). The return plot of the time series shown in the inset was calculated by representing the fluorescent signal, Xn, with a lag of 150ms with respect to itself, Xn+1. This graph allows a quick visualization of the richness of high-frequency, low-amplitude oscillations present in the physiological as opposed to the low-frequency, high-amplitude oscillations present in the pathophysiological regime.
... Inverse power law behavior and the amplitude versus frequency relationship exhibited by the mitochondrial oscillator. (A) Oscillations were simulated with our computational model of the mitochondrial oscillator ((10); see also Fig. S4 in Supplementary Material). The double log graph of the amplitude versus frequency (1/period) was plotted from ΔΨm oscillations with amplitudes in the range of 2–124mV and periods ranging from 70 to 430ms, respectively. The simulations for shunt=0.1 and SOD concentrations from 0.9×10−4 to 1.3×10−3 were performed with the set of parameters described in the legend of Fig. 2 (see Cortassa et al. (10) and Cortassa et al. (14)) for detailed parameter descriptions). B) From the simulations, we selected five oscillatory periods in the high frequency domain (between 70 and 300ms) and one from the low-frequency (1-min period) domain and attributed each one of them proportionally to a network composed by 500 mitochondria as described in Supplementary Material (see also Fig. S5). A matrix containing a total of 500 columns (mitochondria) and 6,000 rows was constructed. The time steps represented by the rows correspond to a fixed integration step of 20ms for the numerical integration of the system of ordinary differential equations (see Supplementary Material). We applied RDA and PSA to the average value of each row of the matrix at, e.g., time 1, T1, that represents the experimental average value of fluorescent intensity of the ΔΨm probe (corresponding to mV) obtained every 110ms from 500 mitochondria (on average) from each image of our stack.
... Frequency and amplitude modulation of the mitochondrial oscillator model through changes in the balance between ROS production and ROS scavenging. (A) Oscillation periods of 25ms and 143ms are shown for SOD concentrations of 0.75μM and 1.07μM, respectively. The model parameters used to run the simulations for shunt=0.0744 (defined as the fraction of the electron flow in the respiratory chain diverted to the generation of superoxide anion, O2−) were concentration of respiratory chain carriers, ρREN=2.5×10−6mM; concentration of F1F0 ATPase, ρF1=2.03×10−3mM; [Ca2+]i=0.1μM; Kcc=0.01mM; kSOD1=2.4×106mM−1s−1; kCAT1=1.7×104mM−1s−1; GT=0.5mM; maximal rate of the adenine nucleotide translocase, VmaxANT=5mMs−1; maximal rate of the mitochondrial Na-Ca exchanger, VmaxNaCa= 0.015mMs−1. The O2−concentrations correspond to the mitochondrial matrix space and were calculated as described in Cortassa et al. (14). Remaining parameters were set as described in Cortassa et al. (10) and Cortassa et al. (14). (B) Under similar parametric conditions, the frequency and amplitude of the oscillations in O2− delivered to the cytoplasm as a function of the fractional O2− production in the high-frequency domain (ms). Within the oscillatory region (shaded), the oscillatory period constantly decreased, whereas the amplitude reached a peak and then decreased as a function of the increase in ROS production. A similar analysis was performed in the low-frequency domain (seconds to minutes) for SOD concentrations of 1.87μM (not shown). In the latter case, the amplitude of O2− (0.86mM) did not change as a function of the shunt (from 0.05 to 0.25), whereas the period decreased from 276s to 62s, respectively.
... PSA of TMRM fluorescence time series from the mitochondrial network of cardiomyocytes. Experiments were carried out as described in the legend of Fig. 1 and Materials and Methods. The time series of TMRM fluorescence was subjected to FFT as described in Materials and Methods. (A) PSA: The power spectrum was obtained from the FFT of the TMRM signal as the double log plot of the amplitude (power) versus the frequency. This relationship obeys a homogeneous power law (1/fβ; with f, frequency, and β, the spectral exponent) and is statistically self-similar, which means that there is no dominant frequency. The PSA reveals a broad spectrum of oscillation in normally polarized mitochondria with a spectral exponent of β=1.79, whereas a random process (white noise) gives a β ∼ 0, meaning that there is no relationship between the amplitude and the frequency in a random signal. A β=1.0 (Supplementary Material, Fig. S3) or 2.0 (Fig. 4 B, bottom panels) corresponds to pink or brown noise, respectively. The inverse power law spectrum arises from the coupling of frequency and amplitude in an orderly statistical sequence. The periods, in seconds or milliseconds, at the bottom of panel A are intended to facilitate the interpretation of the high- and low-frequency domains of the spectrum. (B) When the time series of the TMRM fluorescent signal is randomized (mid, left), we obtain a value of β close to zero (mid, right) as opposed to a β=1.79 in the nonrandomized signal (right, top). The spectral exponent β=1.79 (right, top) is consistent with long-range correlations that after signal randomization becomes white noise, with loss of correlation properties β=0.25 (≅ 0) (mid, right) (12).
Snapshots of oscillations. The original movies are presented in the Supplementary material. In the left panel (Supplementary movie-2), white circles evolved from the middle of the original blue circles. These spread over the whole reaction volume and the colors then reversed again. By the end, the whole reaction volume had become blue. In the right panel (Supplementary movie-3), two propellers evolved after fronts had undergone damping. These propellers continued to rotate for several hours. (For interpretation of the references to color in this figure legend, the reader is referred to the web version of this article.)
... Bulk oscillation of hydrogenase. Absorption change of an unbuffered hydrogenase solution containing 2 mM benzyl viologen and 200 nM hydrogenase, with 50 μl (blue line) or 100 μl (red line) of gaseous H2 added at the beginning of the reaction. The measurement was performed in an anaerobic cell with a path-length of 0.6 mm. After addition of H2, the cell was vigorously shaken in order to distribute the H2 evenly in the solution. Stirring the reaction did not affect the oscillation behavior of the reaction: stirred (blue line) and non-stirred (red line) reactions both exhibited oscillations. (For interpretation of the references to color in this figure legend, the reader is referred to the web version of this article.)
... Oscillating reaction... The experiment was performed in a thin-layer reaction chamber , which was flushed with gaseous N2 for 10 min. After the air was replaced by N2, the gas inlet was closed and gaseous H2 was injected into the atmosphere (final H2 concentration 10%). The movie was accelerated 100-fold (1 s in the movie corresponds to 100 s in real time). The total length of the movie is 30 s. The whole movie is repeated and white squares are positioned onto the regions where local oscillations are clearly visible.
Contributors:Zhaoliang Gao, Haifang Cai, Jing Wan, Kun Cai
(a) The initial simulation model for a nano rotation–oscillation transmission system, in which the two straight 16-layer outer (10, 10) carbon tubes (orange parts) are fixed. Initially, there are 16 layers of atoms on each end of the inner tube beyond the constraint of the stators. The lower left end (grey part, 16-layer) of the curved inner (5, 5) carbon nanotube has a constant input rotational speed, i.e., ωin, and the upper right end has an output rotational frequency, i.e., ωout. The value of gap is the axial distance between the upper right end of the inner tube and stator 2. Between the two outer tubes, the mid part of the inner tube with n layers is curved. And the radius of the curved axis, i.e., R, is the distance between O and O∗. θ is the central angle, and equal 90° in this study. After relaxation (b, c and d), near stator 1, the inner tubes do not keep co-axial with the outer tubes and the included angle is ∼2° (see the sections within dashed boxes). (For interpretation of the references to color in this figure legend, the reader is referred to the web version of this article.)
... Histories of gap and amplitudes of gap in Model 2 with respect to input rotational frequency during [2.8, 3.0] ns.
Temperature oscillations which were detected on the Co foil with the modified thermocouple (see Fig. 8). (T=880°C, inlet mixture 20% O2 in CH4, 30ml/min.)
... Forced oscillations... (a) Regular autonomous oscillations at 925°C, flow rate 15ml/min. (a) O2×10, (b) CO2+20, (c) CO+20, (d) H2+40 and (e) CH4+20. (b) Regular autonomous oscillations at 860°C, flow rate 10ml/min after the heating to 925°C and slow cooling down to 860°C. (a) O2×2, (b) CO2+10, (c) CO+20, (d) H2+40 and (e) CH4+70.
... Synchronous temperature oscillations of two Ni foils. Inlet mixture 20% O2 in CH4, 32ml/min.
... Forced temperature oscillations over a Co foil in the presence of a Ni foil. (Inlet mixture: 20% O2 in CH4, 21ml/min.)
... Oscillations... The appearance of autonomous oscillations at 860°C. (a) O2×5, (b) CO2+30 (c) CO+40, (d) H2+80 and (e) CH4+90.
Oscillatory translocation of γPKC-KN-GFP with co-expression of PKC subtype (δ or γ) and effects of various inhibitors on oscillationfrequency of γPKC-KN-GFP
... Ca2+ oscillation... Oscillatory translocation of γPKC-KN-GFP in response to UTP or UDP and regulation of [Ca2+]i oscillation by kinase-activity of γPKC, in CHO-K1 cells. Time courses of γPKC-KN-GFP and γPKC-GFP translocation between the cytoplasm and the plasma membrane stimulated with 100μM UTP (A) or UDP (C) (n≥5). The ratio (fluorescence intensity at the plasma membrane/fluorescence intensity in the cytoplasm) are calculated and plotted at each time point. Representative video of γPKC-GFP and γPKC-KN-GFP after UDP stimulation are available as supplemental Video 1 (600s) and Video 2 (600s), respectively. The numbers of oscillatory translocation (stimulated with 100μM UTP for 15min) of γPKC-GFP, γPKC-KN-GFP, and γPKC-GFP treated with 100μM Go6983 (n≥3) (B). Change of [Ca2+]i after stimulation with UDP are monitored as 340/380 ratio of the fluorescence in CHO-K1 cells (loaded with 5μM Fura 2-AM) expressing γPKC-GFP, γPKC-KN-GFP, or GFP alone (D) (n≥3).
... Different mechanism and regulation between P2Y2R-induced (left) and mGluR5-induced (right) [Ca2+]i oscillation through kinase-activity of γPKC and δPKC. The stimulatory pathways are shown as arrows. Inhibitory regulations are indicated by inhibitory arrow. Broken arrows indicate the pathways not involved in the regulation of [Ca2+]i oscillation.
Contributors:Ondřej Kučera, Daniel Havelka
Schematic position of spontaneous mechanical oscillations in cells within the frequency spectrum. Passive and active oscillations are connected with the concept of linear and nonlinear oscillator, respectively.