Contributors:Massalha, Hassan, Bahar Halpern, Keren, Abu Gazala, Samir, Jana, Tamar, E. Massasa, Efi, E. Moor, Andreas, Pikarsky, Eli, Amit, Ido, Zamir, Gideon, Itzkovitz, Shalev
Matlab scripts used to analyze data associated with the manuscript entitled "A single cell atlas of the human liver tumor microenvironment".
*please used Matlab 2019b to run the following m files.
inputData.mat: mat contains all raw and preprocessed data used in the study
Create_Interactions_Network.m: Matlab script used to calculate Ligand-Receptor interaction score between different cell types. The script creates panels of Figure 3 and Table S5.
Hepatocytes_Reconstruction.m: Matlab script used to reconstruct human hepatocytes zonation along the lobule axis. The script creates panel 'c' of Figure 4, Figure S4, and Table S7.
Cancer_Cells_Spatial_Analysis.m: Matlab script used to calculate differential gene expression between malignant cells found at different zones (malignant border, malignant core, and fibrotic zone) captured by laser microdissection. The script creates panel 'd' of Figure 4
helperFunctions.zip: This folder contains required functions used by the m files.
Contributors:Gabriela Montejo-Kovacevich, Letitia Cookson, Eva van der Heijden, Ian Warren, David P. Edwards, Chris Jiggins
Cambridge Butterfly Collection. Loreto, Peru Part 1
EN: This upload contains photographs taken by Eva van der Heijden at the Butterfly Genetics Group at the University of Cambridge, from a butterfly wing collection from Loreto, Peru, in collaboration with Green Gold Forestry. Individual sample names can be found in the information sheet. Further Information on individual samples from the Butterfly Genetics Group Collection can be found on the public database Earthcape (click here for the database, and here for FAQ). Please contact Chris Jiggins (c.jiggins[at]zoo.cam.ac.uk) or Gabriela Montejo-Kovacevich (gmontejokovacevich[at]gmail.com) for further information.
ES: Este repositorio contiene fotografías tomadas por Eva van der Heijden en el Butterfly Genetics Group de la Universidad de Cambridge, de mariposas de Loreto (Peru), en colaboración con la compañía Green Gold Forestry. Puede encontrar información sobre muestras individuales de Butterfly Genetics Group Collection en la base de datos pública Earthcape (haga clic aquí para la base de datos, y aquí para preguntas frecuentes) Por favor, póngase en contacto con Chris Jiggins (c.jiggins [arroba] zoo.cam.ac.uk) o Gabriela Montejo-Kovacevich (gmontejokovacevich[at]gmail.com) con sus preguntas o peticiones.
Integrating data from multiple sources with the aim to identify records that correspond to the same entity is required in many real-world applications including healthcare, national security, and businesses. However, privacy and confidentiality concerns impede the sharing of personal identifying values to conduct linkage across different organizations. Privacy-preserving record linkage (PPRL) techniques have been developed to tackle this problem by performing clustering based on the similarity between encoded record values, such that each cluster contains (similar) records corresponding to one single entity. When employing PPRL on databases from multiple parties, one major challenge is the prohibitively large number of similarity comparisons required for clustering, especially when the number and size of databases are large. While there have been several private blocking methods proposed to reduce the number of comparisons, they fall short in providing an efficient and effective solution for linking multiple large databases. Further, all of these methods are largely dependent on data. In this paper, we propose a novel private blocking method for efficiently linking multiple databases by exploiting the data characteristics in the form of probabilistic signatures and introduce a local blocking evaluation step for validating blocking methods without knowing the ground-truth. Experimental results show the efficacy of our method in comparison to several state-of-the-art methods.
This are the R codes used to generate the research clusters and its respective plots in the paper "What are the ingredients for food systems change towards sustainability? - Insights from the literature" by Weber, Hanna; Poeggel, Karoline; Eakin, Hallie; Fischer, Daniel; Lang, Daniel; von Wehrden, Henrik; Wiek, Arnim, which is currently under revision. The code groups publications into different clusters based on co-abundancy of words. The main code is the file “using_ginko_explained”, which sources the codes “statistics” and “scopus”, as well as the csv-file "Conceptual_Vocabulary".
Snapshot of peer-evaluated artifact corresponding to the published conference paper .
 Sandeep Dasgupta, Sushant Dinesh, Deepan Venkatesh, Vikram S. Adve, and
Christopher W. Fletcher 2020. Scalable Validation of Binary Lifters. In
Proceedings of the 2020 ACM SIGPLAN Conference on Programming Language Design
and Implementation. ACM. https://doi.org/10.1145/3385412.3385964