Trapped-ions form a promising platform to realize a future large scale quantum computing device. Qubits are typically stored in internal electronic states, which are coupled using their joint motion in the trap potential. In this thesis this control paradigm is reversed. The harmonic motion of a trapped calcium ion forms the main subject of studies, which is controlled via the internal electronic states. A number of new techniques are introduced and examined, primarily based on the implementation of modular variable measurements. These are realized combining an internal state dependent optical dipole force with readout of the internal states. Modular measurements are used to investigate large "Schrödinger cat'' states of the ion's motion, to violate Leggett-Garg tests of macroscopic realism, and finally to realize a logical qubit encoded in an error-correcting code based on the trapped-ion oscillator. The latter offers an alternative to the standard qubit based quantum information processing approach, which when embedded in systems of coupled oscillators could lead to a large-scale quantum computer. Measurements of a particle's modular position and momentum have been the focus of various discussions of foundational quantum mechanics. Such modular measurements of the trapped-ion's motion are studied in depth in this thesis, in particular their ability to commute, which forms a key element for the latter work on error-correcting codes. Here we make use of the ability to investigate sequences of measurements on a single harmonic oscillator, and study correlations between their results, as well as quantum measurement disturbances between the measurements. In order to achieve the major results of the thesis, it was necessary to characterize and control multiple wave packets in phase space. On the characterization side, the need to cope with states with high energy occupations led to the development of multiple new methods for quantum state tomography, including the use of a squeezed eigenstate basis, and the direct extraction of the characteristic function of the oscillator using state-dependent forces. These were used to analyze some of the largest oscillator "Schrödinger cat'' states which have been produced to date. The main result of this thesis is encoding and full control of a logical qubit in the motional oscillator space using a code proposed 18 years ago by Gottesman, Kitaev and Preskill. Logical code states are realized and manipulated using sequences of up to five modular measurements applied to an ion initially prepared in a squeezed motional state. Such sequences realize superpositions of multiple squeezed wave packets, which form the code words. The usage of the oscillator enables to encode and in principle correct a logical qubit within a single trapped ion, which when compared to typical qubit-array based approaches simplifies control and hardware. While the discussion above focuses on the new physics in this thesis, in addition the work required technical upgrades to the system, improving control of both qubit and oscillator. These form important components which have impact on all experiments in our setup, beyond the bounds of the current thesis.,ISBN:5800134927809,
Contributors:Scarlino, Pasquale, Van Woerkom, David J., Mendes, Udson C., Koski, Jonne V., Landig, Andreas J., Andersen, Christian K., Gasparinetti, Simone, Reichl, Christian, Wegscheider, Werner, Ensslin, Klaus, Ihn, Thomas, Blais, Alexandre, Wallraff, Andreas
Semiconductor qubits rely on the control of charge and spin degrees of freedom of electrons or holes confined in quantum dots. They constitute a promising approach to quantum information processing, complementary to superconducting qubits. Here, we demonstrate coherent coupling between a superconducting transmon qubit and a semiconductor double quantum dot (DQD) charge qubit mediated by virtual microwave photon excitations in a tunable high-impedance SQUID array resonator acting as a quantum bus. The transmon-charge qubit coherent coupling rate (~21 MHz) exceeds the linewidth of both the transmon (~0.8 MHz) and the DQD charge qubit (~2.7 MHz). By tuning the qubits into resonance for a controlled amount of time, we observe coherent oscillations between the constituents of this hybrid quantum system. These results enable a new class of experiments exploring the use of two-qubit interactions mediated by microwave photons to create entangled states between semiconductor and superconducting qubits.,Nature Communications, 10 (1),
Contributors:Tigges, Marcel, Dénervaud, Nicolas, Greber, David, Stelling, Jörg, Fussenegger, Martin
Circadian clocks have long been known to be essential for the maintenance of physiological and behavioral processes in a variety of organisms ranging from plants to humans. Dysfunctions that subvert gene expression of oscillatory circadian-clock components may result in severe pathologies, including tumors and metabolic disorders. While the underlying molecular mechanisms and dynamics of complex gene behavior are not fully understood, synthetic approaches have provided substantial insight into the operation of complex control circuits, including that of oscillatory networks. Using iterative cycles of mathematical model-guided design and experimental analyses, we have developed a novel low-frequency mammalian oscillator. It incorporates intronically encoded siRNA-based silencing of the tetracycline-dependent transactivator to enable the autonomous and robust expression of a fluorescent transgene with periods of 26 h, a circadian clock-like oscillatory behavior. Using fluorescence-based time-lapse microscopy of engineered CHO-K1 cells, we profiled expression dynamics of a destabilized yellow fluorescent protein variant in single cells and real time. The novel oscillator design may enable further insights into the system dynamics of natural periodic processes as well as into siRNA-mediated transcription silencing. It may foster advances in design, analysis and application of complex synthetic systems in future gene therapy initiatives.,Nucleic acids research, 38 (8),
Contributors:Ramaswamy, Rajesh, Sbalzarini, Ivo F.
Mesoscopic oscillatory reaction systems, for example in cell biology, can exhibit stochastic oscillations in the form of cyclic random walks even if the corresponding macroscopic system does not oscillate. We study how the intrinsic noise from molecular discreteness influences the frequency spectrum of mesoscopic oscillators using as a model system a cascade of coupled Brusselators away from the Hopf bifurcation. The results show that the spectrum of an oscillator depends on the level of noise. In particular, the peak frequency of the oscillator is reduced by increasing noise, and the bandwidth increased. Along a cascade of coupled oscillators, the peak frequency is further reduced with every stage and also the bandwidth is reduced. These effects can help understand the role of noise in chemical oscillators and provide fingerprints for more reliable parameter identification and volume measurement from experimental spectra.,Scientific Reports, 1,
Contributors:Scheffzük, Claudia, Kukushka, Valeriy I., Vyssotski, Alexei L., Draguhn, Andreas, Tort, Adriano B.L., Brankačk, Jurij
Background The mammalian brain expresses a wide range of state-dependent network oscillations which vary in frequency and spatial extension. Such rhythms can entrain multiple neurons into coherent patterns of activity, consistent with a role in behaviour, cognition and memory formation. Recent evidence suggests that locally generated fast network oscillations can be systematically aligned to long-range slow oscillations. It is likely that such cross-frequency coupling supports specific tasks including behavioural choice and working memory. Principal Findings We analyzed temporal coupling between high-frequencyoscillations and EEG theta activity (4–12 Hz) in recordings from mouse parietal neocortex. Theta was exclusively present during active wakefulness and REM-sleep. Fast oscillations occurred in two separate frequency bands: gamma (40–100 Hz) and fast gamma (120–160 Hz). Theta, gamma and fast gamma were more prominent during active wakefulness as compared to REM-sleep. Coupling between theta and the two types of fast oscillations, however, was more pronounced during REM-sleep. This state-dependent cross-frequency coupling was particularly strong for theta-fast gamma interaction which increased 9-fold during REM as compared to active wakefulness. Theta-gamma coupling increased only by 1.5-fold. Significance State-dependent cross-frequency-coupling provides a new functional characteristic of REM-sleep and establishes a unique property of neocortical fast gamma oscillations. Interactions between defined patterns of slow and fast network oscillations may serve selective functions in sleep-dependent information processing.,PLoS ONE, 6 (12),ISSN:1932-6203,
Circuit quantum electrodynamics (QED) is a powerful approach to study excitations of and engineer and control interactions between superconducting qubits using microwave quantum fields. Recently, the potential of circuit QED has also been explored in the context of semiconductor quantum systems motivated by the possibility to study their excitations in new frequency regimes and the progress towards quantum information architectures based on semiconductor nanostructures. Two hybrid circuit QED architectures are explored in this thesis. They consist of gate-defined semiconductor double quantum dots acting as two-level quantum systems dipole coupled to single photonic modes of microwave cavities. In the first type of device, the double quantum dot charge qubit couples to a superconducting coplanar waveguide resonator at a rate lower than its decoherence rate. This weakly coupled system already provides an interesting platform to study the physics of the quantum dots at microwave frequencies. This thesis discusses experiments exploring microwave emission from a voltage-biased double quantum dot. We detect radiation emitted in inelastic electron tunneling processes between the dots and the leads and in interdot transitions resonant with the cavity. The dependence of the emission signal on the quantum dot level configuration provides a novel way to probe the hybridization and broadening of the electronic double dot states. In the second device architecture, the double quantum dot is coupled to a frequency-tunable high impedance resonator consisting of an array of superconducting quantum interference devices. Due to the high characteristic impedance of these resonators, the coupling strength is increased beyond the decay rates of qubit and resonator – the condition defining the strong coupling regime. Strong coupling is demonstrated in measurements of the vacuum Rabi mode splitting showing a coupling strength of 155 MHz, which is the highest coupling strength reported in comparable systems.The qubit linewidth of 40 MHz is independently extracted in spectroscopy measurements. Achieving strong coupling to microwave cavities poses a crucial step towards semiconductor-based quantum information architectures as it enables e.g. time-resolved measurements, quantum non-demolition readout or the coupling of distant qubits or different types of qubits via the resonator.
High frequencyoscillations (HFOs) are recognized as biomarkers for epileptogenic brain tissue. A remaining challenge for epilepsy surgery is the prospective classification of tissue sampled by individual electrode contacts. We analysed long-term invasive recordings of 20 consecutive patients who subsequently underwent epilepsy surgery. HFOs were defined prospectively by a previously validated, automated algorithm in the ripple (80–250 Hz) and the fast ripple (FR, 250–500 Hz) frequency band. Contacts with the highest rate of ripples co-occurring with FR over several five-minute time intervals designated the HFO area. The HFO area was fully included in the resected area in all 13 patients who achieved seizure freedom (specificity 100%) and in 3 patients where seizures reoccurred (negative predictive value 81%). The HFO area was only partially resected in 4 patients suffering from recurrent seizures (positive predictive value 100%, sensitivity 57%). Thus, the resection of the prospectively defined HFO area proved to be highly specific and reproducible in 13/13 patients with seizure freedom, while it may have improved the outcome in 4/7 patients with recurrent seizures. We thus validated the clinical relevance of the HFO area in the individual patient with an automated procedure. This is a prerequisite before HFOs can guide surgical treatment in multicentre studies.,Scientific Reports, 7 (1),
Objectives High frequencyoscillations (HFOs) have been proposed as a new biomarker for epileptogenic tissue. The exact characteristics of clinically relevant HFOs and their detection are still to be defined. Methods We propose a new method for HFO detection, which we have applied to six patient iEEGs. In a first stage, events of interest (EoIs) in the iEEG were defined by thresholds of energy and duration. To recognize HFOs among the EoIs, in a second stage the iEEG was Stockwell-transformed into the time-frequency domain, and the instantaneous power spectrum was parameterized. The parameters were optimized for HFO detection in patient 1 and tested in patients 2–5. Channels were ranked by HFO rate and those with rate above half maximum constituted the HFO area. The seizure onset zone (SOZ) served as gold standard. Results The detector distinguished HFOs from artifacts and other EEG activity such as interictal epileptiform spikes. Computation took few minutes. We found HFOs with relevant power at frequencies also below the 80–500 Hz band, which is conventionally associated with HFOs. The HFO area overlapped with the SOZ with good specificity > 90% for five patients and one patient was re-operated. The performance of the detector was compared to two well-known detectors. Conclusions Compared to methods detecting energy changes in filtered signals, our second stage - analysis in the time-frequency domain - discards spurious detections caused by artifacts or sharp epileptic activity and improves the detection of HFOs. The fast computation and reasonable accuracy hold promise for the diagnostic value of the detector.,PLoS ONE, 9 (4),ISSN:1932-6203,
Contributors:Zhu, Guanyu, Schmidt, Sebastian M., Koch, Jens
Photon-based strongly correlated lattice models like the Jaynes–Cummings and Rabi lattices differ from their more conventional relatives like the Bose–Hubbard model by the presence of an additional tunable parameter: the frequency detuning between the pseudo-spin degree of freedom and the harmonic mode frequency on each site. Whenever this detuning is large compared to relevant coupling strengths, the system is said to be in the dispersive regime. The physics of this regime is well-understood at the level of a single Jaynes–Cummings or Rabi site. Here, we extend the theoretical description of the dispersive regime to lattices with many sites, for both strong and ultra-strong coupling. We discuss the nature and spatial range of the resulting qubit–qubit and photon–photon coupling, demonstrate the emergence of photon-pairing and squeezing and illustrate our results by exact diagonalization of the Rabi dimer.,New Journal of Physics, 15,ISSN:1367-2630,