Data on competency (360 degree feedback), employability and career success
Data of soil chemistry, ITS sequences and plots informations.
Target soil fungi using Illumina sequencing with ITS as marker gene.
15 permanent plots of forests dominated by arbuscular mycorrhizal or ectomyoccrhizal trees or both.
Located at the Station de Biologie des Laurentides, Université de Montréal.
*fastq.gz contain the sequence data for each samples
soil.csv contains soil chemistry and plots informations.
label_soil_sample.csv links identifiers for sequencing (i.e. sample) and soil analysis (i.e. sampleID)
Scripts for bioinformatical and statistical analyses can be found here: https://doi.org/10.5281/zenodo.3631982
Contributors:Dumas Deconinck, Filip A.M. Volckaert, Kris Hostens, Remigiusz Panicz, Piotr Eljasik, Miguel Faria, Carolina Sousa Monteiro, Johan Robbens, Sofie Derycke
Dataset containing samples (pseudonymized) gathered to assess substitution fraud in the Belgian fishing supply chain from the paper:
A high-quality genetic reference database for European commercial fishes reveals substitution fraud of processed Atlantic cod (Gadus morhua) and common sole (Solea solea) at different steps in the Belgian supply chain
Contributors:van der Hooft, J.J.J., Padmanabhan, S., Burgess, K.E.V., Barrett, M.P.
Detect and visualize antihypertensive drug metabolites in untargeted metabolomics experiments
6/26 patients on antihypertensive therapy
Mass spectrometer :
Thermo Q-Exactive coupled to pHILIC chromatography using data dependent analysis (DDA) MS/MS gas-phase experiments
Clay minerals data from 77186 and 77171
Gene raw read counts of gene expression data on the following genotypes:
Tph1-knockout, Ldlr-knockout, double-knockout (Tph1+Ldlr) and WT.
Each genotype type is fed on both a high- and low-fat diets.
Data set for phylogenetic analysis, we used the Pfam v31.0 database to determine which proteinortho clusters represent the ADC proteins. A total of 37 homologs belonging to alphaproteobacteria sequences were tested with a group of nine external sequences were aligned against Muscle v3.8.31. The resulting dataset containing 46 putative ADC homologs was used to infer the evolutionary relationships. We used ProtTest3 v3.4.2 for the evolutionary model and, the best result was LG+G model; using amino acid alignment. The phylogenetic analysis was performed with PhyML v3.3.20170530 under (-d aa -m LG -a e -o ltr) parameters.
Contributors:Michael R Rosen
Supplementary file S1: Chemical groundwater data used for analysis in the Journal article entitled "Li and Ca enrichment in the Bristol Dry Lake brine compared to brines from Cadiz and Danby Dry Lakes, Barstow-Bristol Trough, California, USA" by Michael R. Rosen, Lisa L. Stillings, Tyler Kane, Kate Campbell-Hay, and Matthew Vitale, P.G., Ray Spanjers, P.G.in the Journal Minerals
Supplementary file S2: Chemical data from extractions from 10 clay samples from Bristol Dry lake by acid digestion. used in "Li and Ca enrichment in the Bristol Dry Lake brine compared to brines from Cadiz and Danby Dry Lakes, Barstow-Bristol Trough, California, USA" by Michael R. Rosen, Lisa L. Stillings, Tyler Kane, Kate Campbell-Hay, and Matthew Vitale, P.G., Ray Spanjers, P.G.in the Journal Minerals.
Methods for all data are in the journal article.
Data is for Bristol, Cadiz and Danby playas (Dry Lakes). Most data has been previously published either online in the California Division of Water Resources website, or in other USGS publications or journal articles. Some data from Cadiz Dry lake has not been previously published and publication of these data has been granted by Tetra Technologies Inc. and Standard Lithium LLC.
Contributors:Williams, Eleanor, Bullock, Alex
Testing the ability of purified ALK2 and ALK2 GS loop phosopho-mutants to phosphorylate the target SMAD1 in the presence of ACVR2 purified protein.
To read more please check out our Open Lab Notebook project.
1. Raw data: *.csv, and additionaldata.rar
2. Code: 1read.f90, 2separate_str_con_Dm.f90 and 0plotstation.ncl
3. Information of stations : station.txt
4. Instantaneously co-located matched surface disdrometers: Matched_1D_DSD_data_forFig4.docx