Filter Results
3949370 results
This dataset is a bibliographical database associated to the journal article "Twenty Years of Distributed Port-Hamiltonian Systems: A Literature Review" by R. Rashad, F. Califano, A.J. van der Schaft, and S. Stramigioli. In this article we review the research studies carried out in the past twenty years in the field of Distributed Port-Hamiltonian systems. The dataset includes the papers reviewed in this article, classified in their respective groups, which are over 150 studies. In addition, the dataset has an extra of 80 more studies that were not cited in the review paper, but are related to the field. All journal articles and the majority of the conference proceedings have their DOI included in the dataset. The main .bib file is named "Reference_List_Review". We hope this could guide new researchers in the field and accelerate the research and development of this powerful paradigm.
Data Types:
  • Dataset
  • Text
COVID-19 reported cases and deaths through 3/31/2020 world wide, excluding China and South Korea
Data Types:
  • Dataset
  • Text
Different human linker histone (H1) variants are expected to have distinct binding modes to the nucleosome. The position and orientation of a number of different H1 globular domains on the nucleosome were investigated through molecular docking using MGLTools and HADDOCK. The nucleosome core and linker DNA in the GH5-chromatosome structure (PDB: 4QLC) were used as a docking template. GH5 (in PDB: 4QLC) was re-docked to this template to test the docking algorithm. Docked and re-docked GH5 compared well. The docking algorithm was further tested by docking the NMR solution structure of the globular domain of chicken H1 (GH1, PDB: 1GHC) to the nucleosome template. The position of docked GH1 on the nucleosome agreed with literature. 
The N-terminal - and globular domain H1x hybrid (NGH1x) was studied using solution NMR in both low (20 mM sodium phosphate, pH 7.0) and high (20 mM sodium phosphate, 1 M sodium perchlorate, pH 7.0) ionic strength conditions (de Wit, H., Vallet, A., Brutscher, B. et al. Biomol NMR Assign (2019) 13: 249. https://doi.org/10.1007/s12104-019-09886-x). These low and high ionic strength structures were docked to the nucleosome template. 
Homology (MODELLER) and ab initio modeling (CS-ROSETTA) were employed to model structures for other human H1 globular domains: GH1.0, GH1.4, GH1oo, and GH1t. The modeled structures were also docked to the nucleosome template.
 All the docking procedures listed above produced 100 models of different energies. In each case, the lowest energy docked model was chosen. The structures of all the H1 globular domains that were docked to the template are given as PDB files (1GHC_lowest_energy.pdb; 2LSO_lowest_energy.pdb; GH5_re-docked_position.pdb; NGH1x_high_salt_NTD.pdb; NGH1x_low_salt_NTD.pdb; modeled_GH1_0_lowest_energy.pdb; modeled_GH1_4_lowest_energy.pdb; modeled_GH1oo_lowest_energy.pdb; modelled_GH1t_lowest_energy.pdb) in the data file. The nucleosome template structure is also given in PDB file format (4QLC_nucleosome_without_GH5.pdb). Finally, the docked models are also given (GH5-chromatosome.pdb; 1GHC-chromatosome.pdb; 2LSO-chromatosome.pdb; GH1_0-chromatosome.pdb; GH1_4-chromatosome.pdb; GH1oo-chromatosome.pdb; GH1t-chromatosome.pdb; NGH1x_no_salt-chromatosome.pdb; NGH1x_salt-chromatosome.pdb). The files are compatible with most molecular graphics software. The file Dockings_modelling_test_and_results.pdf provides the modeling and docking results in figures and tables. A short description of each figure and table is given within the PDF file.
Data Types:
  • Sequencing Data
  • Dataset
  • Document
Supplementary materials for publication JAAD-D-19-02716 (Lim et al. Novel Mutations Identified by Whole Exome Sequencing in Acral Melanoma. J Am Acad Dermatol. 2020) Supplementary Appendix 1: Detailed methods Supplementary Appendix 2: Clinical details of 31 acral melanoma patients including 7 nail apparatus melanoma patients Supplementary Appendix 3: Single nucleotide variations and small indels identified through WES Supplementary Appendix 4: Several genes whose mutations were repeatedly detected in this study and previously reported in the literature in association with melanoma Supplementary Appendix 5: Previous studies on the association of CSMD3 and EHMT1 with malignancies
Data Types:
  • Tabular Data
  • Dataset
  • Document
This data set contains the following data files: - `biomat-conductivity.csv`: Measured hydraulic conductivities of the soil and biomat - `biomat-growth.csv`: Time for sensor positions (within upper 5 cm) to reach a 2.5% increase in VWC for each site and treatment - `biomat-parameters.csv`: Parameters for biomat growth models - `effluent-data.csv`: Effluent pollutant concentrations - `hydrus-parameters.csv`: Parameters used in HYDRUS modeling - `met-data.csv`: Meteorological data - `sensor-control.csv`: VWC observations for control sensors installed outside the soil treatment unit - `sensor-meta.csv`: Meta data for sensor locations - `site-meta.csv`: Meta data for the research sites - `vwc-predrought.csv`: VWC changes before the onset of the summer 2018 drought - `vwc-postdrought.csv`: VWC changes during the summer 2018 drought A detailed description of the content of each data file is given in the codebook provided with this dataset.
Data Types:
  • Tabular Data
  • Dataset
  • Text
The descriptive data presented in this article is used to measure the level of student’s satisfaction with university facilities which are provided by the university as well as the government. This study involved 280 respondents comprising diploma, bachelor degree and post graduate student at Malaysian Public University. An open-ended question with 10 Likert Scale was distributed to respondents to identify the level of student’s satisfaction with the facilities provided by the university. The one to 10 scale measurements starting with one is Strongly Dissatisfied to 10 is Strongly Satisfied has been used to measure the level of student’s satisfaction towards 14 facilities at the university.
Data Types:
  • Tabular Data
  • Dataset
  • Document
  • Text
Explanation and description of the microscopic data of mice tissue histology under concern by the Editor's of Plos One
Data Types:
  • Dataset
  • Document
  • File Set
This file contains a prototype semi-structured interview questionnaire that was used for cross country synthesis on the subject of post-disaster reconstruction and resettlement
Data Types:
  • Dataset
  • Document
As a part of a research into new techniques for purifying recycled aluminium alloys, a novel electromagnetic apparatus had been developed for investigating in real-time the separation mechanisms of detrimental inclusions in aluminium alloy melts under alternating magnetic fields. The magnetic coil was designed based on the Helmholtz coil design. A viewing gap was designed for in-situ imaging studies using synchrotron X-rays. The gap was designed to maintain a uniform magnetic field in the central region where a sample is positioned. The current setup for the magnetic coil pair is able to produce a peak magnetic flux density of ~10 mT at a frequency of 25 kHz. A separate electrical resistance furnace, designed to concentrically fit within the magnetic coils, was used to control the heating (up to ~850°C) and cooling of the samples. After a series of systematic tests and commissioning, the apparatus was used in a number of in-situ and ex-situ experiments.
Data Types:
  • Tabular Data
  • Dataset
  • Document
This dataset contains the primary data used in: "Multi-epoch X-ray burst modelling: MCMC with large grids of 1D simulations", Johnston et al. (2020). In this work, we interpolated and sampled a grid of 3840 KEPLER burst models using Markov Chain Monte Carlo (MCMC) methods to produce posterior distributions for the system parameters of the "Clocked Burster", GS 1826-238. Provided here is the full burst model grid and the raw MCMC sample chains. More details on the files, and how to load them, are provided in README.md
Data Types:
  • Software/Code
  • Dataset
  • Text
  • File Set