Contributors:Nico Schlömer, Antonio Cervone, Geordie McBain, tryfon-mw, Ruben van Staden, Filip Gokstorp, toothstone, anzil, Juan Sanchez, Dominic Kempf, Matthias Bussonnier, Yuan Feng, awa5114, Tomislav Maric, Siwei Chen, nilswagner, Nate, ivanmultiwave, Fred Fu
Gmsh for Python
Contributors:Holger Nahrstaedt, skjerns, David T.H. Kao, Shannon Clarke, Jukka Zitting, David Ojeda, Chadwick Boulay, anthracene, Ogi Moore, Matthias Klumpp, Daniil Kosachev, Christian Miller
Add python 3.8 to CI
Contributors:Dominique Orban, Abel Soares Siqueira
Tools for developing nonlinear optimization solvers in Julia
Contributors:Nico Schlömer, Geordie McBain, Keurfon Luu, Tianyi Li, christos, Vicente Mataix Ferrándiz, Chris Barnes, Lisandro Dalcin, eolianoe, nilswagner, Abhinav Gupta, Vladimír Lukeš, Sebastian Müller, Leo Schwarz, Jan Blechta, Chris Coutinho, Darcy Beurle, s1291, Bhavesh Shrimali, Antonio Cervone, Timothy Langlois, Steve Peak, Shriramana Sharma, Matthias Bussonnier, lgiraldi, Guillaume Jacquenot, Ghislain Antony Vaillant, Cian Wilson, Alexey U. Gudchenko, Adrian Croucher
input/output for many mesh formats
This release adds support for remote comms to create/update/delete bounding boxes from remote video apps. See this README
Contributors:Cesar Luis Aybar Camacho, Roy Yali Samaniego
R bindings for calling the Earth Engine API
Simple deep learning classification tool select good and bad classes automatically
Contributors:Anders Kaestner, Chiara Carminati
Extended documentation and user manual in the wiki page.
Publication lists related to the software and modules.
Stability and performance improvements in BBLogNorm and MorphSpotClean.
Increased portability of the configuration file.
The main application can now save to multi-frame TIFF.
Conversion tools can now save to FITS.
Issue 414 - Add citations to kiptool modules
Issue 412 - KipTool - error configuring modules that require loading images
Issue 409 - Adopt kiptool to new API
Issue 400 - Imageviewer widget histograms
Issue 381 - kipl::base::morphology LabelImage crashes on Win
Issue 374 - BB - exception is not thrown when automatic segmentation fails
Issue 370 - BB module, add automatic counting of external background images
Issue 369 - Implement wall clock time the timer class
Issue 368 - BB wrong number of ext images does not throw the right exception
Issue 365 - MorphSpotClean crashes on windows
Issue 355 - Wavelet ring cleaning crashing
Issue 352 - Implement computation of numerical gradient
Issue 343 - Plot widget updates
Issue 340 - Image viewer levels sensitive to nan and inf
Issue 319 - KipTool - progress bar when loading data
Issue 318 - KipTool - BB plugin crashes in the absence of a ROI
Issue 307 - KipTool - add rotation option
Issue 291 - BB plugin in KipTool
Issue 277 - Revise the MorphSpotCleanModule
Issue 273 - Review how we get more conform to the FAIR principle
Issue 271 - KipTool - saving fits in conversion tool
Issue 270 - KipTool - configuring processing chain
Issue 259 - KipTool , conversion tool
Issue 246 - KipTool - single image as input
Issue 221 - KipTool: progress bar starts at 100%
Issue 205 - Boundary handling MorphSpotClean
Issue 186 - PlotWidget save data
Issue 166 - User documentation for KipTool
Issue 87 - MorphSpotClean crash sometimes
Issue 39 - Morph spot clean performance tuning
Issue 23 - Config files compatible cross platform
Contributors:Gregory M. Kurtzer, cclerget, Michael Bauer, Ian Kaneshiro, David Godlove, WestleyK, Vanessasaurus, Yannick Cote, David Trudgian, Geoffroy Vallee, DrDaveD, tri-adam, Justin Cook, Jason Stover, Joana Chavez, Brian P Bockelman, Marcelo Magallon, Jacob Chappell, Daniele Tamino, Carlos Arango Gutierrez, Sasha Yakovtseva, Carl Madison, Mike Frisch, Dave Love, Satrajit Ghosh, Amanda Duffy, Vadim Pisaruk, Tru Huynh, Mike Gray
Singularity 3.5.3 is a bugfix release with the following changes and fixes:
Changed defaults / behaviours
The following minor behaviour changes have been made in 3.5.3 to allow correct operation on CRAY CLE6, and correct an issue with multi-stage image builds that was blocking use by build systems such as Spack:
Container action scripts are no longer bound in from etc/actions.d on the host. They are created dynamically and inserted at container startup.
%files from ... will no longer follow symlinks when copying between stages in a multi stage build, as symlinks should be copied so that they resolve identically in later stages. Copying %files from the host will still maintain previous behavior of following links.
Bind additional CUDA 10.2 libs when using the --nv option without nvidia-container-cli.
Fix an NVIDIA persistenced socket bind error with --writable.
Add detection of ceph to allow workarounds that avoid issues with sandboxes on ceph filesystems.
Ensure setgid is inherited during make install.
Ensure the root directory of a build has owner write permissions, regardless of the permissions in the bootstrap source.
Fix a regression in %post and %test to honor the -c option.
Fix an issue running %post when a container doesn't have /etc/resolv.conf or /etc/hosts files.
Fix an issue with UID detection on RHEL6 when running instances.
Fix a logic error when a sandbox image is in an overlay incompatible location, and both overlay and underlay are disabled globally.
Fix an issue causing user namespace to always be used when allow-setuid=no was configured in a setuid installation.
Always allow key IDs and fingerprints to be specified with or without a 0x prefix when using singularity keys
Fix an issue preventing joining an instance started with --boot.
Provide a useful error message if an invalid library:// path is provided.
Bring in multi-part upload client functionality that will address large image upload / proxied upload issues with a future update to Sylabs cloud.
In addition, numerous improvements have been made to the test suites, allowing them to pass cleanly on a range of kernel versions and distributions that are not covered by the open-source CI runs.
Many thanks to those who have contributed code, bug reports, and testing!
As always, please report any bugs to: https://github.com/sylabs/singularity/issues/new
If you think that you've discovered a security vulnerability please report it to: