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All DEGs and primers sequences for qRT-PCR validation.
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Data from: Bitomský M., Mládková P., Pakeman RJ, & Duchoslav M. (2020). Clade composition of a plant community indicates its phylogenetic diversity. Ecology and Evolution. doi: 10.1002/ece3.6170 Data summarises results from the case studies and simulations presented in our paper. In addition, we provide an R script for calculation of proposed phylogenetic diversity metrics (the clade indices). Brief description of each file: 1. Grasslands_DNA_markers_info.xls - Accession numbers of all DNA markers used for phylogeny inference in grasslands 2. Grasslands_DNA_alignment_BEFORE_GBlocks.fasta - DNA alignment matrix before utilisation of the GBlocks tool 3. Grasslands_DNA_alignment_AFTER_GBlocks.fasta - DNA alignment matrix after utilisation of the GBlocks tool 4. Grasslands_BEAST_file.xml - BEAST .xml file submitted to the CIPRES portal (www.phylo.org) 5. Grasslands_tree.txt - Dated MCC tree, grasslands (newick format) 6. Grasslands_tree.nex - Dated MCC tree, grasslands (nexus format) 7. Phyto-database_pruned_tree.txt - Pruned dated tree from the super tree of European flora (Durka & Michalski 2012, Ecology), phytosociological database (newick format) 8. Plot_data.slx - plot data of all case studies + species lists 9. Simulation_results.txt - Summary of R2 values (phylogeny-based metric ~ the clade index) for simulated phylogenies and community matrices (manipulated: phylogenetic scale, species pool size and species richness range) 10. Bitomsky2020EE_R_script_indices.R - An R script for computation of the clade indices (with notes and examples)
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Open data and R analysis scripts for the paper as submitted for publication: "Poppelaars, E. S., Klackl, J., Pletzer, B., & Jonas, E. (2020). Delta-beta cross-frequency coupling as an index of stress regulation during social-evaluative threat." Hypotheses and analyses were preregistered: Poppelaars, E. S., Klackl, J., Pletzer, B., & Jonas, E. (2018). Delta-beta cross-frequency coupling as an index of stress regulation during social-evaluative threat. Open Science Framework. https://osf.io/8gchf/register/565fb3678c5e4a66b5582f67. Description of the dataset: A dataset of 37 men and 30 women (tested in the luteal phase of their menstrual cycle) participated in a public speaking task to induce social-evaluative threat. Responses of multiple stress systems were measured (sympathetic and parasympathetic nervous system activity, self-reported affect, and hypothalamic–pituitary–adrenal axis activity), as well as personality traits (e.g. trait social anxiety), and EEG delta-beta cross-frequency coupling (e.g., frontal and parietal amplitude-amplitude correlation and phase-amplitude coupling). Description of analyses files: - File 'README.txt' contains the description of the files (metadata). - File 'SET_CFC_MatlabOutput.xlsx' contains the delta-beta coupling data, calculated using MATLAB scripts from https://github.com/ESPoppelaars/Cross-frequency-coupling. - File 'SETData.sav' contains the raw stress and personality data, taken from https://doi.org/10.17632/7vj8r76s6f. - Files 'SET_CFC.outl.del.RData' contains the complete dataset with missing values and outliers deleted. - File 'Codebook_SET_CFC.outl.del.csv' contains a description of all variables in the 'SET_CFC.outl.del.RData' file (metadata). - Files 'SET_CFC.outl.del.imp.RData' and 'SET_CFC.outl.del.imp.extra.RData' contain multiple imputed datasets (without missing values) that can be used to reproduce results from the paper. - File 'LSA_HSA_brief.RData' contains data to use as informed priors for the Bayesian analyses, calculated from data published at https://doi.org/10.3758/s13415-018-0603-7. - File 'Codebook_LSA_HSA_brief.csv' contains a description of all variables in the 'LSA_HSA_brief.RData' file (metadata). - File '01_CalculationOfData.R' is an R analysis script that imports the raw data, calculates new variables, and imputes missing data via multiple imputation using the 'predictorMatrixAdj.xlsx' file. - File '02_AnalysisOfImputedData.R' is an R analysis script that calculates descriptive statistics, creates plots, and tests hypotheses using t-tests, Bayesian statistics, and multiple lineair regressions. Also uses the custom functions: 'BF.evidence.R', 'cohen.d.magnitude.R' and 'p.value.sig.R', as well as the 'BF_t.R' file as taken from https://doi.org/10.17045/sthlmuni.4981154.v3.
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the inheritance of some rice agronomic characteristics associated with environmental genic male sterile (EGMS), twenty hybrids which produced by crossing among four lines and five testers. Analysis of variance of combining ability revealed significant differences among genotypes, crosses, lines, testers and line x tester interactions. The significant differences among the lines, testers and lines x testers indicated that the genotypes had wide genetic diversity among themselves for all traits except days to heading, chlorophyll content, panicle length and apparent heterosis for parents. Five hybrids WTSC9059S x Sakha101, WTSC9039S x Sakha102, WTSC9059S x Sakha108, WTSC9039S x Sakha108 and WTSC9039S x Sakha101 having better mean yield performance are recommended for heterosis breeding.
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The inheritance of some rice agronomic characteristics associated with environmental genic male sterile (EGMS), twenty hybrids which produced by crossing among four lines and five testers. Analysis of variance of combining ability revealed significant differences among genotypes, crosses, lines, testers and line x tester interactions. The significant differences among the lines, testers and lines x testers indicated that the genotypes had wide genetic diversity among themselves for all traits except days to heading, chlorophyll content, panicle length and apparent heterosis for parents. Five hybrids WTSC9059S x Sakha101, WTSC9039S x Sakha102, WTSC9059S x Sakha108, WTSC9039S x Sakha108 and WTSC9039S x Sakha101 having better mean yield performance are recommended for heterosis breeding. All traits were studied are governed by non-additive type of genes which necessitates selection in later generations for improvement. Variances of SCA were higher than the GCA variances for traits studied which indicated predominance of non-additive gene action in the inheritance of the traits.
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Adsorption free energy profiles of cationic and uncharged surfactant micelles adsorbing on a gold-water surface.
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Raw data, computed data and state commands for all main analyses (Fig 2, 3 and 4) and subgroup analyses presented in JAMA Intern Med. 2018;178(10):1317-1331. doi:10.1001/jamainternmed.2018.3713
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Data about manuscript
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Data: pseudonymised full data of the two cases analysed in "Math in the time of social media: a conceptualization of the Internet phenomenon of mathematical memes" Authors: Giulia Bini1, Ornella Robutti1, Angelika Bikner-Ahsbahs2 Affiliations: 1University of Turin, Italy, 2Universität Bremen, Germany Ambit: mathematics education Research: ethnographic research on the Internet phenomenon of the mathematical memes from an educational point of view. Period: February 2018 - current
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Termites are present in different environments, they perform the functions of cycling organic compounds in the soil and decomposing organic matter. Through this behavior, some species can generate great economic losses in the agricultural environment for some cultures. Such insects can communicate through semi-chemical and vibroacystic signals. These signals transmit different types of messages. The vibroacoustic signals occur when there is interaction between the generated vibrating waves, which can, consequently, generate understandable optical interference phenomena when light is applied, one of these phenomena that can be understood is the dynamic biospeckle. It is proposed in this research, to evaluate the bioactivity of the termite Nasutitermes corniger (Insecta: Isoptera) during the walk using the optical phenomenon of interference Biospeckle. Termites were collected in colonies present on the University campus of the Federal University of Sergipe-UFS. 25 individuals were randomly selected, distributed in 5 groups. Such individuals will be submitted to the simulation activity of walking in arenas created using Petri dishes (14 x 1.5 cm) which were exposed to laser light, during the movement of the insect videos were captured which were later processed using the Generalized Differences Method and the Moment of Inertia. It was possible to detect the areas of walking and of greater activities caused naturally by the groups of Nasutitermes corniger present in the arenas, as well as the method of MI showed to be significantly different when analyzed before and during the walking. Thus, it is possible to analyze the walking activity of Nasutitermes corniger by means of dynamic biospeckle in different types of light, which can be applied as a possible tool to evaluate the termite's bioactivity.
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