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The bacterial community dynamics of cellulase, Lactobacillus casei, and air treated alfalfa silage were studied using Illumina Miseq sequencing. Medicago sativa was ensiled without (CON) or with L. casei (LC) or cellulose (CE) for 56 days, then exposed to air for 3 days (PO). The bacterial communities were obviously different among groups and sample times; and Lactobacillus developed to a dominant status in all silages. Lactobacillus became dominant in bacterial communities of LC and CE silages from days 7 to 56, and their relative abundances reached 94.17% and 83.93% at 56 d, respectively. For CON silage, Lactobacillus were not the dominant genus on day 7; samples were mainly composed of several genera, including Lactobacillus, and Lactococcus, Enterococcus, and Enterobacter. Lactobacillus (75.10%) were the dominant genera in silage on day 56. After 3 days of oxygen exposure, Lactobacillus and Enterococcus were predominant in CON, and Lactobacillus remained dominant in LC and CE silages. The results indicate that, compared to untreated treated silages, L. casei could be a priority inoculant for alfalfa silage to boost Lactobacillus abundance and improve fermentation quality.
Data Types:
  • Sequencing Data
  • Dataset
urate_glacier.grd: The present-day vertical land motion rates (mm/yr) due to the 20th-century glacier mass loss on a 10-arc minute resolution grid along the Pacific coast of North America urate_gwd.grd: The present-day vertical land motion rates (mm/yr) due to the ground water extraction on a 10-arc minute resolution grid along the Pacific coast of North America
Data Types:
  • Sequencing Data
  • Dataset
Data on Community Structure and Diversity of the Intestinal Bacteria in Wild Elver and Fingerling Stages of Indonesian Shortfin Eel (Anguilla bicolor bicolor)
Data Types:
  • Sequencing Data
  • Dataset
1-Files that resulted from application of PHARMIP insilico method to explore adverse drug reactions on 2 examples of domperidone related cardio-toxicity and ranitidine related thrombocytopenia . 2-Files that are used to apply the step of molecular docking on the previous examples.
Data Types:
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  • Software/Code
  • Sequencing Data
  • Tabular Data
  • Dataset
  • Document
  • Text
DSA files of human (N to Z, by gene name) : UniProt ID is used for a protein to which no gene name is assigned.
Data Types:
  • Other
  • Slides
  • Software/Code
  • Geospatial Data
  • Image
  • Sequencing Data
  • Tabular Data
  • Dataset
  • Document
  • Text
  • File Set
DSA files of E. coli (N to Z, by gene name) : UniProt ID is used for a protein to which no gene name is assigned.
Data Types:
  • Other
  • Software/Code
  • Image
  • Sequencing Data
  • Tabular Data
  • Dataset
DSA files of human (A to M, by gene name) : UniProt ID is used for a protein to which no gene name is assigned.
Data Types:
  • Other
  • Slides
  • Software/Code
  • Geospatial Data
  • Image
  • Sequencing Data
  • Tabular Data
  • Dataset
  • Document
  • Text
DSA files of E. coli (A to M, by gene name) UniProt ID is used for a protein to which no gene name is assigned.
Data Types:
  • Other
  • Software/Code
  • Geospatial Data
  • Image
  • Sequencing Data
  • Tabular Data
  • Dataset
  • Document
  • Text
Bind-n-seq sequence dataset and analysis package
Data Types:
  • Sequencing Data
  • Dataset
  • File Set
Mafft-linsi assembled amino acid neuropeptide precursor sequences from 41 blattodean and 3 polyneopteran outgroup species; these data are deduced from transcriptome sequence assemblies obtained from the 1KITE project (Genbank Umbrella Bioproject ID PRJNA183205). For Zootermopsis nevadensis (Isoptera), annotated precursor sequences (Veenstra, 2014) were included in the alignments after their annotations were manually checked. Incomplete sequences are indicated with “?”. In total 17 individual neuropeptide precursor alignments are given. Additionally, a concatenated alignment of the complete dataset, a concatenated alignment of signal peptide sequences (calculated using SignalP-5.0) and a concatenated alignment of the remaining precursor without the signal peptide sequence (Propeptide) are given. Furthermore, a concatenated alignment of neuropeptide sequences and a concatenated alignment of the remaining precursor peptide sequences are given. In addition, concatenated alignments of single-copy and multiple-copy neuropeptides are given.
Data Types:
  • Sequencing Data
  • Dataset
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