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Code for calculating event rates and likelihoods for Dark Matter direct detection experiments in the presence of Earth-Scattering
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Various fixes for improved scalability (many projects or a project with many files): Better caching of the the project index and more granular updating of the project cache (less regenerating) Improved reporting of project size, was too often out of date #89 Narrowed the scope of the provenance data generated by CLAM, it was too verbose, had too much duplication per file, and led to scalability issues #79 Implemented a 'quick' mode that skips loading metadata (can be triggered by the user or is automatically enabled if a timeout value (90s by default) is reached #79
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ClimateTools v0.20.0 Diff since v0.19.0 Merged pull requests: ClimateBase 0.6 (#141) (@Balinus)
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Changelog: edfimage: Improved robustness (PR #315) Read without all restrictions of the "Klora" convention (PR #318) Fixed example (PR #322) Improved performances: Do not create a temporary string (PR #323) Recognize a Global Header Section and using it as default (PR #328) Fixed cleaning header block reading (PR #332) Reading binary data from files and tests (PR #333) Make magic readable (PR #339) mar345image: Provide all the default file extension for mar345 (PR #354) numpyimage: Fixes (PR #314, #344) pixiimage: Improved file series filename parsing (PR #317) tifimage: Improved TIFF via Pillow (PR #321) Added support of esperanto format (PR #347, #351) Fixed minor issues (PR #338) and compatibility with h5py (PR #350) Improved tests (PR #320, #341, #345) and requirement.txt (PR #331) Updated debian packaging (PR #324, #326), added debian11/ubuntu20.04 support (PR #355) Added changelog file (PR #357) Remove packagin for debian 6, 7 and 8, add support for debian11 Drop support for Python2 and 3.4, validated version are 3.5-3.8 on mac, win & linux
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Added ExomeDepth
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ClimatePlots v0.3.0 Diff since v0.2.2 Merged pull requests: 4D maps handling (#26) (@Balinus) CompatHelper: bump compat for "ClimateBase" to "0.3" (#27) (@github-actions[bot]) Climabase 0.4 (#32) (@Balinus)
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GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
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First official release of the Whole Antarctic Ocean Model (WAOM) after 4 years of development by Ole Richter, Ben-Galton Fenzi, David Gwyther and Kaitlin Naughten in the framework of Oles PhD.
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Initial CRAN release of plantecowrap. Provides wrapping functions to add to capabilities to 'plantecophys' (Duursma, 2015, doi:10.1371/journal.pone.0143346). Key added capabilities include temperature responses of mesophyll conductance (gm, gmeso), apparent Michaelis-Menten constant for rubisco carboxylation in air (Km, Kcair), and photorespiratory CO2 compensation point (GammaStar) for fitting A-Ci or A-Cc curves for C3 plants (for temperature responses of gm, Km, & GammaStar, see Bernacchi et al., 2002, doi:10.1104/pp.008250; for theory on fitting A-Ci or A-Cc curves, see Farquhar et al., 1980; doi:10.1007/BF00386231, von Caemmerer, 2000, ISBN:064306379X; Ethier & Livingston, 2004 doi:10.1111/j.1365-3040.2004.01140.x; and Gu et al., 2010, doi:10.1111/j.1365-3040.2010.02192.x). Includes the ability to fit the Arrhenius and modified Arrhenius temperature response functions (see Medlyn et al., 2002, doi:10.1046/j.1365-3040.2002.00891.x) for maximum rubisco carboxylation rates (Vcmax) and maximum electron transport rates (Jmax) (see Farquhar et al., 1980; doi:10.1007/BF00386231).
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