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This release contains the first stable version of the app and the associated reportfactory describing the model.
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add user control of output directory
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Feature Update agentMET4FOF to v0.1.3 (70a587f5c548061340d02241b228f7b7688f067c) Update PyDynamic to v1.2.82 (6ae2fdadf52aee02b0284590e346401dd9067677) Documentation Express version in which fit_filter.py will be deprecated (2ff7f07cdcb6303a3b009cff049c8c20685ae485)
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4.4.0 (2020-03-30) Bug Fixes Benchmarks: fix geometry benchmarks (52fe1fc) ModelIO: output component informations (5ceb60c) Features Distance: distance computations (1e00bad) Geometry: gemetry class for simple objects (Plane, Sphere...) (8d8efcc) Geometry: some geometric computations (97c14ea) Projection: geometric projection computations (9de4799) Python: geometric object and computation bindings (d399d19)
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Change models Added Levy-flight and Opposition-based techniques in Root.py Fixed codes include levy-flight and opposition-based of: QSA HGSO TWO NMRA PFA SFO SSO Added new modified version of models based on Levy-flight: LCBO (LevyLCBO) SSDO (LevySSDO) EO (LevyEO) AEO (LevyAEO) MRFO (LevyMRFO) NMRA (LevyNMRA) Change others models_history.csv: Update history of meta-heuristic algorithms examples: Added new examples tested base-version and levy-version of: LCBO, SSDO, EO, AEO, MRFO, NMRA
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Code to reproduce the paper "Summarizing the state of the terrestrial biosphere in few dimensions"
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Analysis scripts for the Contingent Motivation study
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ABC-Finder: A containerized web server for the identification and subsequent topology prediction of ABC proteins.
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This release fixes a bug that prevented the installation of version 1.0.4. For more information about changes and updates please look into previous release notes. Fix vendor file download
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Changes made since the previous version (v2.1.1) enh: add GIfTI support enh: add CIfTI support enh: all the non-parametric WB p-values are now computed using a tolerance of 10^-8 for comparing real numbers enh: the maximum TFCE scores are now saved into SwE.mat enh: the WB procedure now makes voxel-wise inference on Z or X instead of T or Z (the main reason for this is to be consistent with cluster-wise inference which forms clusters based on Z or X) enh: improve the thresholding description in the result display enh: add a new function swe_compareVersions able to compare versions of the toolbox enh: add a (hidden) way to supply a WB resampling matrix instead of letting the toolbox generate one by itself enh: add the effective number of degrees of freedom Approximation I for the WB enh: replace the loop over planes by a loop over chunks of data enh: improve the way some X-scores are computed in order to prevent Inf values enh: add the option to constrain volume clusters to be within the ROI boundaries in CIfTI analyses enh: modify the naming convention for CIfTI, GIfTI and .mat outputs to better match PALM naming convention fix: the p-value thresholding is now inclusive for WB analyses fix: for WB analyses, the p-values displayed are systematically the WB p-values instead of the parametric p-values fix: fix a result display error observed for the classic parametric SwE fix: fix some typos fix: fix some bugs in the progress display and improve it fix: fix several bugs in the result display GUI fix: ensure that each CIfTI outputs contain an appropriate CIfTI XML file fix: replace the nan values in output files by zero values (this is to avoid issues when reading the CIfTI outputs in other software packages) fix: keep only one "NameMap" in the XML extension of the toolbox dscalar.nii outputs fix: fix bugs related to zeroing nan values fix: fix several bugs related to the naive estimation of the effective number of degrees of freedom fix: fix a bug in the detection of sub-design matrices fix: fix a bug where some ROI volume labels with multiple 'V_' would not be processed correctly Link to relevant issues Issue #5 Issue #41 Issue #102 Issue #107 Issue #121 Issue #122 Issue #123 Issue #124 Issue #132 issue #140 issue #148 issue #150 issue #153 issue #154 issue #156
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