C. concisus PglJ Sequence Similarity Network and Genome Neighborhood Diagrams
Published: 16 October 2023| Version 1 | DOI: 10.17632/24g8n465k9.1
Contributors:
, , Description
The provided datasets are Cytoscape-compatible files that detail the sequence similarity network (SSN) and genome neighborhood diagrams of C. concisus PglJ ATCC 33237. Dataset S1 is an all-by-all blast 90% representative node network file, E-value: 1 x 10-5. Dataset S2 is a genome neighborhood diagram, derived from the 90% representative node network, with a co-occurrence threshold of 20%. Dataset S3 is a spreadsheet that lists UniProt IDs and sequences for all non-redundant members within the sequence similarity network. Dataset S4 contains UniProt IDs and sequences for Campylobacter SSN members featuring the NEC motif, and Dataset S5 contains UniProt IDs and sequences for Campylobacter SSN members featuring the SER motif.
Files
Institutions
Massachusetts Institute of Technology, Boston University
Categories
Glycoconjugate, Membrane Protein