Python Jupyter Notebook to Perform Automatic Microscopic Image Analysis by Moving Window Local Fourier Transform and Machine Learning

Published: 19 December 2023| Version 3 | DOI: 10.17632/25x46xjyr5.3


Python Jupyter Notebook together with exemplary images to perform automatic microscopic image analysis using moving window local Fourier Transform and Machine Learning data decomposition using Non-Negative Matrix Factorization (NMF). The number of decomposition components is obtained from prior PCA Scree Plot analysis. fix for new scikit-learn version 1.1 or above (init of NMF changed) tested with HyperSpy-bundle 2023.05.16 hyperspy >=1.7.5



Uniwersytet Jagiellonski w Krakowie Wydzial Fizyki Astronomii i Informatyki Stosowanej, Uniwersytet Jagiellonski w Krakowie Instytut Fizyki im Mariana Smoluchowskiego


Microscopy, Machine Learning, Principal Component Analysis, Electron Microscopy, Image Analysis (Medical Imaging), Scanning Electron Microscopy, Scanning Transmission Electron Microscopy