Multifactorial heterogeneity of the human mutation landscape related to DNA replication dynamics
Code related to the manuscripts: - Caballero M, Boos D, and Koren A. The landscape of somatic mutations in lymphoblastoid cell lines. (2023). - Caballero M and Koren A. Cell type specificity of the human mutation landscape with respect to DNA replication dynamics (2023) Files include: - Consensus replication timing profiles for LCL, HT115, HCT116, and LS180 in hg38 coordinates. - Mutations for LCL, CLL, HT115, HCT116, and LS180 in hg38 coordinates. - Code used in analyses including replication timing generation and mutation calling.
Steps to reproduce
See methodology in manuscript.