Helper scripts

Published: 01-10-2020| Version 1 | DOI: 10.17632/3zhx6kyytp.1
Contributor:
Coral del Val

Description

Collection of Perl and R helper scripts for extracting and summarizing some fields from the Pepstats and Fuzzpro outputs. Both programs belong to the EMBOSS open source suite. 'When using these scripts, please cite Konstantina Karathanou, Michalis Lazaratos, Éva Bertalan, Malte Siemers, Krzysztof Buzar, Gebhard F.X. Schertler, Coral del Val, and Ana-Nicoleta Bondar (2020). A graph-based approach identifies dynamic H-bond communication networks in spike protein S of SARS-CoV-2'

Files

Steps to reproduce

1-Generate output with the corresponding emboss program 2- use the corresponding extract_field.pl 3- use the corresponding R script for summarizing the results