Data for: Assessing the potential of RAD-sequencing to resolve phylogenetic relationships within species radiations: the fly genus Chiastocheta (Diptera: Anthomyiidae) as a case study
Description
Data files used for the phylogenetic and phylogenomic analysis of the genus Chiastocheta (Diptera: Anthomyiidae) for the paper: Suchan T, Espíndola A, Rutschmann S, Emerson BC, Gori K, Dessimoz C, Arrigo N, Ronikier M, Alvarez N (2017) Data from: Assessing the potential of RAD-sequencing to resolve phylogenetic relationships within species radiations: the fly genus Chiastocheta (Diptera: Anthomyiidae) as a case study. Molecular Phylogenetics and Evolution Details on the methods can be found in the main paper. Description of the data files: Chiastocheta_c75d6m20p10-blk-bad.alleles - pyRAD alleles file of the RAD-seq data Chiastocheta_c75d6m20p10-blk-bad.phy - Phylip file of the concatenated RAD-seq data Chiastocheta_COI_COII_dloop.phy - Phylip file of the concatenated mtDNA regions: COI, COII, D-loop (with gaps occuring in more than 50% of individuals removed) Chiastocheta_COI_COII_dloop.partitions - partitions file for the Phylip file of the concatenated mtDNA regions: COI, COII, and D-loop (with gaps occuring in more than 50% of individuals removed) Chiastocheta_COI_COII.phy - Phylip file of the concatenated mtDNA regions: COI and COII Chiastocheta_COI_COII.partitions - partitions file for the Phylip file of the concatenated mtDNA regions: COI and COII