HEPASS algorithm dataset
This repository contains the image dataset and the manual annotations used to develop the HEPASS algorithm for automated liver steatosis quantification: - Salvi M., Molinaro M., Metovic J., Patrono D., Romagnoli R., Papotti M, and Molinari F., "Fully Automated Quantitative Assessment of Hepatic Steatosis in Liver Transplants", Computers in Biology and Medicine 2020 (DOI: 10.1016/j.compbiomed.2020.103836) ABSTRACT Background: The presence of macro- and microvesicular steatosis is one of the major risk factors for liver transplantation. An accurate assessment of the steatosis percentage is crucial for determining liver graft transplantability, which is currently based on the pathologists’ visual evaluations on liver histology specimens. Method: The aim of this study was to develop and validate a fully automated algorithm, called HEPASS (HEPatic Adaptive Steatosis Segmentation), for both micro- and macro-steatosis detection in digital liver histological images. The proposed method employs a hybrid deep learning framework, combining the accuracy of an adaptive threshold with the semantic segmentation of a deep convolutional neural network. Starting from all white regions, the HEPASS algorithm was able to detect lipid droplets and classify them into micro- or macrosteatosis. Results: The proposed method was developed and tested on 385 hematoxylin and eosin (H&E) stained images coming from 77 liver donors. Automated results were compared with manual annotations and nine state-of-the-art techniques designed for steatosis segmentation. In the TEST set, the algorithm was characterized by 97.27% accuracy in steatosis quantification (average error 1.07%, maximum average error 5.62%) and outperformed all the compared methods. Conclusions: To the best of our knowledge, the proposed algorithm is the first fully automated algorithm for the assessment of both micro- and macrosteatosis in H&E stained liver tissue images. Being very fast (average computational time 0.72 seconds), this algorithm paves the way for automated, quantitative and real-time liver graft assessments.