Leishmania donovani (HU3) genome: alignment of Illumina sequence reads

Published: 18 March 2024| Version 1 | DOI: 10.17632/4xxgfx2fdf.1
Contributor:
Jose M. Requena

Description

This dataset contains the files (bam and bam.bai) generated after the alignment to the assembled genome of the L. donovani (HU3 strain) species of the Illumina sequence reads derived from the whole DNA sequencing of this parasite by Illumina technology. The preparation and processing of the Illumina data used for creating this dataset are described in the article by Camacho et al (PMID: 30992521); the raw data are publicly available at the European Nucleotide Archive (ENA; http://www.ebi.ac.uk/ena/) under the accession number PRJEB23341.

Files

Steps to reproduce

1. Open the genome fasta file (https://data.mendeley.com/datasets/b82fm2w2h9/2) using the IGV tool (or equivalent genome viewer) 2. Load the file LdHU3_corrected_illumina_sorted.bam (note that the bam.bai file should be located in the same folder).

Institutions

Universidad Autonoma de Madrid Centro de Biologia Molecular Severo Ochoa

Categories

Leishmania, Genome Sequencing

Funding

Agencia Estatal de Investigación

PID2020-117916RB-I00/AEI/10.13039/501100011033

Licence