Analysed data sets of Next generation sequenced whole genome of chrysopelea ornata: Microsatellites, gene prediction and proteomics for forensic applications.
Description
This study provides the list of microsatellites, genes and protiens in the whole genome of Chrysopelea ornata. A total of 338,108 ideal microsatellites were detected by the utilization of MISA to examine the genome sequence. A study was conducted on the distribution of six SSR categories, which includes mononucleotide, dinucleotide, trinucleotide, tetranucleotide, pentanucleotide, and hexanucleotide repeats. The findings, presented in Table 1, disclose the comparative distribution of each category. Out of the microsatellites that were found, mononucleotide repeats were the most common, making up 33% of all the perfect SSRs. The distribution of SSR categories, following mononucleotide repeats, was as follows: tetranucleotide (24%), dinucleotide (18%), trinucleotide (15%), pentanucleotide (9%), and hexanucleotide (1%). This study enhances the understanding of the distribution of microsatellites in the genome of Chrysopelea ornata. Gene prediction using Augustus identified a total of 156,707 genes. Annotation with UniParc and UniProt databases resulted in 26,195 and 8,510 protein IDs, respectively.