Aberrant epigenetic silencing of amplified genomic regions in ovarian cancer

Published: 14 Jun 2019 | Version 1 | DOI: 10.17632/623s8b9vb4.1
Contributor(s):

Description of this data

DCPM_analysis_BonitoEtAl2019.R: R script for data import and analysis
SupplementaryAnalysis_BonitoEtAl2019.R: R script for analysis to produce supplementary figures and tables
clinical_slide_all_ov.txt: TCGA cellularity data
full450k.rds: Illumina HumanMethylation450k annotation
ICGC_OV-AU_CNVbyCpG.rds: ICGC copy-number data matrix
ICGC_OV-AU_GX.rds: ICGC gene expression data matrix
ICGC_OV-AU_Meth.rds: ICGC DNA methylation data matrix
Illumina27k_annotation2.rds: Illumina HumanMethylation27k detailed annotation
Illumina27k_annotation.rds: Illumina HumanMethylation27k basic annotation
sample.OV-AU.tsv: ICGC cellularity data (and sample ID table)
TCGA_OV_CBS.rds: TCGA copy-number data matrix
TCGA_OV_GX.rds: TCGA gene expression data matrix
TCGA_OV_meth.rds: TCGA DNA methylation data matrix

Experiment data files

Steps to reproduce

DCPM_analysis.R includes all R code required to load datasets and repeat analyses

Latest version

  • Version 1

    2019-06-14

    Published: 2019-06-14

    DOI: 10.17632/623s8b9vb4.1

    Cite this dataset

    Curry, Ed (2019), “Aberrant epigenetic silencing of amplified genomic regions in ovarian cancer”, Mendeley Data, v1 http://dx.doi.org/10.17632/623s8b9vb4.1

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Institutions

Imperial College London

Categories

Genomics, Ovarian Cancer, Transcriptomics, Epigenetics

Licence

CC BY 4.0 Learn more

The files associated with this dataset are licensed under a Creative Commons Attribution 4.0 International licence.

What does this mean?

This dataset is licensed under a Creative Commons Attribution 4.0 International licence. What does this mean? You can share, copy and modify this dataset so long as you give appropriate credit, provide a link to the CC BY license, and indicate if changes were made, but you may not do so in a way that suggests the rights holder has endorsed you or your use of the dataset. Note that further permission may be required for any content within the dataset that is identified as belonging to a third party.

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