Predictions of transcription factor binding sites of JA-, ABA-, SA- and Ethylene pathway genes in Arabidopsis thaliana

Description

Plant physiological processes are under the strong regulation of the phytohormone signaling network. Phytohormones are derivatives of primary and secondary metabolism, like salicylic acid, ethylene, jasmonic acid, and abscisic acid. The regulation of plant stress responses, adaptation to the environment, growth, or differentiation depend on the synthesis, transport, expression, and transcription control of genes and their regulatory proteins involved in these pathways. Therefore, we collected and grouped the all-possible transcription factors (TFs) and their predicted promoter binding sites of 35 genes that regulate these four pathways. This data presents the lists of TFs of the investigated key genes and their promoter specificity data queried from the EPDnew database using two probability P values in A. thaliana model plant.

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The presented data were queried from the EPDnew promoter database using two probability (cut-off) P values (0.0001 and 0.00001) in A. thaliana model plant, using the library: transcription factor motifs JASPAR CORE 2018 Plants. Promoter sites were analyzed from -5000 to 1000 bp relative to TSS.

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