sativa-rufipogon_SNP_matrix
Published: 10 September 2018| Version 1 | DOI: 10.17632/74dbx8bmp9.1
Contributors:
Peter Civan, Sajid AliDescription
This new IRGSP-1.0-based genome-wide nucleotide diversity matrix comprises 595 domesticated accessions of Oryza sativa (283 indica, 154 tropical and temperate japonica, 124 aus, 34 aromatic) and 461 wild rice accessions and consists of 2,365,188 biallelic positions. The dataset was created by merging the 18 million SNP dataset by the 3,000 rice genome project, and the data produced by Huang et al. (2012) re-mapped by us onto the IRGSP-1.0 reference.
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Institutions
The University of Manchester
Categories
Genomics, Population Genetics, Cereal Crop, Asian Rice