Data for: Four hundred shades of brown: Higher level phylogeny of the problematic Euptychiina (Lepidoptera, Nymphalidae, Satyrinae) based on hybrid enrichment data

Published: 29 November 2018| Version 1 | DOI: 10.17632/7pymjcdg7p.1
Contributors:
Marianne Espeland, Olaf H.H. Mielke, Jesse Breinholt, Thamara Zacca, Blanca Huertas, Jacqueline Miller, Shinichi Nakahara, Andrew D. Warren, Eduardo Barbosa, Andre Freitas, Denise Tan, Mario Alejandro Marín, Mirna Martins Casagrande, Keith Willmott, Akito Kawahara, Gerardo Lamas

Description

The following data has been uploaded: 1) Alignments_of_all_loci.zip: Alignments in fasta format of all loci used in the analyses 2) Concatenated_alignments_models_and_partition_files.zip : The concatenated alignment in phylip format, as well as both a locus partition file (part.txt), which can be used to split the alignment into individual loci, and a file (models_merge.nex) with the partitions and substitution models used in the analyses. 3) Maximum_likelyhood_newick.tree: The tree maximum likelihood tree topology inferred using IQ-tree 4) Exabayes.tree: Maximum credibility tree inferred using bayesian inference in Exabayes. In nexus format. 5) ASTRAL_output_filtered.tre: Species tree topology inferred using ASTRAL based on the filtered dataset, e.g. only loci longer than 250bps and with a GC value lower than 60 were included. 6) ASTRAL_ouput_all.tree: Species tree topology inferred using ASTRAL based on the total dataset

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Categories

Insects, Lepidoptera, Phylogenetics, Phylogenomics, Butterfly

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