Data_NTS_pathway_Accumulibacter

Description

The following dataset contains the scripts and input files required to reproduce the results shown in the Figures and Tables of the manuscript entitled “A new glycolytic route involving Rubisco in heterotrophic phosphate-accumulating bacteria”.

Steps to reproduce

The numbers in the names of the scripts (e.g. 01, 02, etc) indicate the order in which the scripts must be executed. This order is critical because some generated output files are input files in subsequent scripts. In the cases of the scripts written in Python, we strongly recommend the creation of two environments, and installing in these environments the packages listed in the files “packages_environment_metabolomics.txt” and “packages_to_run_equilibrator.txt”. After the configuration of the environments, it should be possible to launch Jupyter Notebook and execute the scripts.

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