Genome-wide association study for milk yield, frame, and udder conformation traits of Gir dairy cattle -- Supplemental files
Description
These are the supplemental files for the article published in the Journal of Dairy Science, identified by the DOI:https://doi.org/10.3168/jds.2024-24648 Table S1. The number of animals genotyped, number of SNPs by chip. Table S2. Gene identification and percentage of genetic variance explained by windows associated with milk yield and body conformation traits related to the udder and frame in Gir dairy cattle. Figure S1. Linkage disequilibrium decay calculated as the r2 mean. Figure S2. Rectangular Manhattan plot of the -log10 (P-value) for milk yield (a), hip height (b), hearth girth (c), and rum angle (d) in Gir dairy cattle. The dashed line indicates the Bonferroni threshold (0.05 divided by the number of SNPs) Figure S3. Rectangular Manhattan plot of the -log10 (P-value) for rear udder width (a), udder depth (b), teat length (c), and teat diameter (d) in Gir dairy cattle. The dashed line indicates the Bonferroni threshold (0.05 divided by the number of windows) Figure S4. Rectangular Manhattan plot of proportion of additive genetic variance (%) explained by 0.11-megabase window for milk yield (a), hip height (b), hearth girth (c) and rum angle (d) in Gir dairy cattle. Figure S5. Rectangular Manhattan plot of proportion of additive genetic variance (%) explained by 0.11-megabase window for (a) rear udder width, (b) udder depth, (c) teat length and (d) teat diameter in Gir dairy cattle.