MannGallen_2017_CurrentBiology

Published: 9 June 2017| Version 1 | DOI: 10.17632/8b6nw2xxhn.1
Contributors:
Courtney Gallen,
Kevin Mann

Description

Alignment of anatomical data, template brain, and atlas ROIs (anatomical.zip) 1- Template and atlas from Virtual Fly Brain project: /Original_atlas_template 2- Mean brain and the template/atlas warped to it: /Meanbrain_aligned 3- Live brain and the meanbrain/atlas warped to it: /livebrain_aligned Functional and atlas data to extract ROI time series (roi_timeseries_data.zip) 1- File of atlas ROIs: /vfb_nn/vfb_nn_Original.nii.gz 2- Functional imaging data: /functional/brain03gc6m.nii.gz Sample 'video' of motion-corrected raw data (sample_video.tiff.zip)

Files

Steps to reproduce

Alignment: See readme in anatomical.zip ROI time series: ROI time series can be created with code from the github repository in Related links

Institutions

University of California San Francisco, Stanford University

Categories

Drosophila, Time Series Analysis, Brain, Calcium Imaging

License