MATLAB source code for developing Ground Truth Dataset, Semantic Segmentation, and Evaluation for LJMU Lumbar Spine MRI Dataset
Description
This file contains the MATLAB source code for developing Ground Truth Dataset, Semantic Segmentation, and Evaluation for Lumbar Spine MRI Dataset. It has the file structure necessary for the execution of the code. Please download the MRI Dataset and the Ground Truth label Image dataset separately and unzip them inside the LJMU Lumbar Spine MRI Dataset and Software\99 Workspace\ folder.
Files
Steps to reproduce
1. Download the LJMU Lumbar Spine MRI Dataset on https://data.mendeley.com/datasets/k57fr854j2/draft?a=b4d53752-f53c-4869-9fbc-1d7808254713 2. Download the Label Image Ground Truth Data for LJMU Lumbar Spine MRI Dataset on https://data.mendeley.com/datasets/zbf6b4pttk/draft?a=cc18d33f-35a4-4427-819c-c4cc128842be 3. Go to LJMU Lumbar Spine MRI Dataset and Software\99 Workspace\ folder 4. Extract the two zip files. Make sure to preserve the folder structures 5. Run MATLAB 2018a 6. Make sure the current active directory is LJMU Lumbar Spine MRI Dataset and Software\99 Workspace\ 7. Execute initialise.m 8. Now you should be able to run files in the following folders to: a) 03 Extract Slices - to extract image slices from MRI data b) 04 Mask Checking - to check the manually labelled data c) 05 Ground Truth Development - to develop the ground truth data d) 06 Semantic Segmentation - to perform and evaluate semantic segmentation