Supplementary data for the article: Study of Arsenophonus symbionts in Hippoboscidae
Description
Alignments: 1. Arsenophonus matrix - concatenated matrix of 57 ortholog sequences (AA) extracted from all available Arsenophonus proteomes (analyzed by PhyML, PhyloBayes and IQ-TREE2) in a fasta format 2. Host mitochondrial matrix - concatenated matrix of 12 mitochondrial genes (NA) extracted from 12 mitochondrial genomes of hippoboscids (analyzed by IQ-TREE2) in a fasta format 3. Host COI matrix - phylogenetic matrix of COI mitochondrial gene (NA) of 63 taxa of hippoboscids (analyzed by IQ-TREE2) in a fasta format 4. Host nuclear matrix - concatenated matrix of 4 genes (NA) extracted from 10 nuclear genomes of hippoboscids (analyzed by IQ-TREE2) in a fasta format Phylogenetic trees folder: Phylogenetic trees generated by PhyML, PhyloBayes and IQ-TREE2 in a newick format. Annotations folder: Annotations of the complete genomes and genome drafts for the the newly described Arsenophonus symbionts of hippoboscids in gbk format. Detailed description of used methods can be found in the Materials and Methods section.
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Alignments: 1. Arsenophonus matrix - concatenated matrix of 57 ortholog sequences (AA) extracted from all available Arsenophonus proteomes (analyzed by PhyML, PhyloBayes and IQ-TREE2) in a fasta format 2. Host mitochondrial matrix - concatenated matrix of 12 mitochondrial genes (NA) extracted from 12 mitochondrial genomes of hippoboscids (analyzed by IQ-TREE2) in a fasta format 3. Host COI matrix - phylogenetic matrix of COI mitochondrial gene (NA) of 63 taxa of hippoboscids (analyzed by IQ-TREE2) in a fasta format 4. Host nuclear matrix - concatenated matrix of 4 genes (NA) extracted from 10 nuclear genomes of hippoboscids (analyzed by IQ-TREE2) in a fasta format Phylogenetic trees folder: Phylogenetic trees generated by PhyML, PhyloBayes and IQ-TREE2 in a newick format. Annotations folder: Annotations of the complete genomes and genome drafts for the the newly described Arsenophonus symbionts of hippoboscids in gbk format. Detailed description of used methods can be found in the Materials and Methods section.
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Funding
Grantová Agentura České Republiky
31-20-07674S