Profile hidden Markov models for the identification of DNMT and TET homologs in insects

Published: 21-03-2018| Version 3 | DOI: 10.17632/8y5wm8887b.3
Panagiotis Provataris


Profile hidden Markov models built from DNMT and TET arthropod sequences. Orthologous sequences of each DNMT and TET were downloaded from OrthoDB( 1. DNMT1: DNA methyltransferase 1 2. TRDMT1: tRNA aspartic acid methyltransferase 2 (also known as DNA methyltransferase 2 or DNMT2) 3. DNMT3: DNA methyltransferase 3 4. TET: Ten-eleven translocation methylcytosine dioxygenase