The chloroplast and mitochondrial genome sequences of worldwide collection of B. napus, B. rapa and B. oleracea accessions
Description
This dataset contains organelle genome sequences of globally collected Brassica accesions, in which the chloroplast genomes consists of 1,327 natural and 31 synthetic B. napus, 90 B.rapa and 107 B. oleracea accessions, and the mitochondrial genomes consists of 1,457 natural and 31 synthetic B. napus, 183 B.rapa and 104 B. oleracea accessions. The genome sequencing data of natural rapeseed accessions were obtained from the NCBI database under SRP155312, PRJNA430009 and PRJNA358784. The raw sequnceing data of 20 synthetic B. napus accessions can be found in European Nucleotide Archive (https://www.ebi.ac.uk/ena/browser/home) under PRJEB5974 and PRJEB6069. The raw sequences of B. rapa and B. oleracea can be found in the NCBI database under BioProject accession PRJNA312457. After quality checking, we first mapped reads to the published cp and mt genomes of six Brassica species. The mapped paired-end reads were next extracted and de novo assembled for the cp and mt genomes by NOVOPlasty and ARC software (http://ibest.github.io/ARC/), respectively.