Data for: Connecting MHC-I-binding motifs with HLA alleles via deep learning

Published: 10-02-2021| Version 1 | DOI: 10.17632/c249p8gdzd.1
Contributors:
Yu-Chuan Chang,
Ting-Fu Chen,
Hsueh-Fen Juan,
Huai-Kuang Tsai,
Chien-Yu Chen

Description

This dataset contains the MHC-I sequences and peptides used for the training and evaluating process of MHCfovea's predictor. 1. MHCI_res182_seq.json: the peptide-binding cleft sequence of each MHC-I allele 2. dataframe.zip: the training, validation, and benchmark datasets - train_hit.csv: measurements extracted from IEDB for the training process - train_decoy_[1-90].csv: artificial decoy peptides for the training process; the data number of each file is almost equal to the number of ligand elution measurements in the train_hit.csv - valid.csv: measurements extracted from IEDB and decoy peptides for validation - test.csv: ligand elution peptides extracted from IEDB and decoy peptides for the testing process

Files