Twenty simulated pedigrees with different combinations of three parameters using R package pedSimulate

Published: 18 October 2021| Version 1 | DOI: 10.17632/c4pv8w8pmp.1
Mohammad A. Nilforooshan


The data consists of twenty pedigrees simulated using R package pedSimulate with different combinations of females selection (random, positively or negatively based on own phenotype or parent (genetic) average), additive genetic variance (10 vs. 20), and proportion of males selected (10% vs. 20%).


Steps to reproduce

The pedigrees were simulated using the following code in R. library(pedSimulate) l = 1 for(i in c("R","P","-P","PA","-PA")) { for(j in c(10,20)) { for(k in c(0.1,0.2)) { ped = simulatePed(F0size=100, Va0=j, Ve=30, littersize=2, ngen=9, overlap.s=1, f.rate=0.8, m.rate=k, fsel=i, msel="PA") write.csv(ped, file=paste0("PED",l,".csv"), row.names=F, quote=F) l = l+1 } } }


Animal Breeding, Pedigree Analysis, Pedigree