Genetic diversity and signature of divergence in the genome of grapevine clones of Southern Italy varieties_Campanian_clones

Published: 1 August 2023| Version 1 | DOI: 10.17632/c6zg3wvkt8.1
Contributors:
Francesca Taranto, Clizia Villano, Riccardo Aversano

Description

The VCF file includes the Campanian clones CAMAIOLA n. (n. 20), AGLIANICO LASCO (n.64), and GRECO B. (n. 24), genotyped by dd-RADseq approach.

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Steps to reproduce

Campanian genetic material was genotyped using ddRADseq (Peterson et al., 2012). The ddRADseq tags were aligned to the reference genome GCA_000003745.2 (Pinot Noir, PN40024) using BWA-MEM (Li and Durbin, 2009). The gstacks and populations (with options -R = 0.75 and --max-obs-het = 0.8) utilities included in Stacks v2.53 (Catchen et al. 2013) were used for SNP calling and for applying filtering options.

Institutions

Universita degli Studi di Napoli Federico II

Categories

Single Nucleotide Polymorphism, Vitis

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