Data and Python scripts for "Improvement of Intervention Information Detection for Automated Clinical Literature Screening during Systematic Review"
Description
Data and Python scripts for "Improvement of Intervention Information Detection for Automated Clinical Literature Screening during Systematic Review"
Files
Steps to reproduce
=== Prepare environment === 1. Just run the following: `pip install -r requirements.txt` === Prepare EBM-NLP original data === 1. Access the original repository and build data according to its README (run `build_data.py`). 2. Move `p2_i_dev.txt`, `p2_i_gold.txt` and `p2_i_train.txt` to `./EBM-NLP` === Set your email address to use PubMed API === 1. Open `./script/all_experiments.sh` and replace YOUR_EMAIL_ADDRESS with your own email address === Conduct all experiments === 1. Just run the following: `sh ./script/all_experiments.sh` 2. The results are stored in `./outputs/logs` as csv files.