Raw DNA methylation data for Sabedot et al.
Published: 6 February 2020| Version 3 | DOI: 10.17632/cgrz6zztfg.3
Contributors:
, Description
Raw DNA methylation data (Illumina EPIC array) for Sabedot et al.
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Steps to reproduce
### R code to read in IDAT files and generate beta-values library(minfi) idat <- read.metharray.exp(targets = NULL,base=getwd(),recursive = TRUE) proc <- preprocessNoob(idat, offset = 0, dyeCorr = TRUE, verbose = TRUE, dyeMethod="reference") detP <- detectionP(idat, type = "m+u") proc.r <- ratioConvert(proc) is.na(assays(proc.r)$Beta) <- (detP[rownames(proc.r), colnames(proc.r)] > 1E-16) beta <- assays(proc.r)$Beta
Institutions
Henry Ford Health System
Categories
Glioma, Glioblastoma Multiforme, DNA Methylation